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    zgc:77739 zgc:77739 [ Danio rerio (zebrafish) ]

    Gene ID: 393870, updated on 9-Dec-2024

    Summary

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    Official Symbol
    zgc:77739provided by ZNC
    Official Full Name
    zgc:77739provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040426-1862
    See related
    Ensembl:ENSDARG00000017985 AllianceGenome:ZFIN:ZDB-GENE-040426-1862
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Orthologous to human C4orf33 (chromosome 4 open reading frame 33). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See zgc:77739 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (12394215..12397886)
    105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (11707395..11711086)

    Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene clathrin, light chain A Neighboring gene sodium channel and clathrin linker 1 Neighboring gene uncharacterized LOC137489976 Neighboring gene uncharacterized LOC137489977

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Gene Characterization of Nocturnin Paralogues in Goldfish: Full Coding Sequences, Structure, Phylogeny and Tissue Expression. Madera D, et al. Int J Mol Sci, 2023 Dec 19. PMID 38203224, Free PMC Article
    2. Transcriptomic analyses reveal novel genes with sexually dimorphic expression in the zebrafish gonad and brain. Sreenivasan R, et al. PLoS One, 2008 Mar 12. PMID 18335061, Free PMC Article
    3. Contrasted innate responses to two viruses in zebrafish: insights into the ancestral repertoire of vertebrate IFN-stimulated genes. Briolat V, et al. J Immunol, 2014 May 1. PMID 24683187
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC77739

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    UPF0462 protein C4orf33 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001431078.1 → NP_001418007.1  UPF0462 protein C4orf33 homolog isoform b

      Status: VALIDATED

      Source sequence(s)
      CT033816
      UniProtKB/Swiss-Prot
      Q6P2T7
      UniProtKB/TrEMBL
      A0A8M2B6F7, F1Q6V3
      Related
      ENSDARP00000145139.1, ENSDART00000184296.1

    2. NM_001431079.1 → NP_001418008.1  UPF0462 protein C4orf33 homolog isoform b

      Status: VALIDATED

      Source sequence(s)
      CT033816
      UniProtKB/Swiss-Prot
      Q6P2T7
      UniProtKB/TrEMBL
      A0A8M2B6F7, F1Q6V3
      Related
      ENSDARP00000115436.1, ENSDART00000138622.3

    3. NM_200896.2 → NP_957190.2  UPF0462 protein C4orf33 homolog isoform a

      Status: VALIDATED

      Source sequence(s)
      CT033816
      UniProtKB/Swiss-Prot
      Q6P2T7
      Related
      ENSDARP00000007907.5, ENSDART00000008127.6

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007112.7 Reference GRCz11 Primary Assembly

      Range
      12394215..12397886
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394464.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      51912..55583
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6P2T7.1 GenPept UniProtKB/Swiss-Prot:Q6P2T7

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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