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    polr3e polymerase (RNA) III (DNA directed) polypeptide E [ Danio rerio (zebrafish) ]

    Gene ID: 336518, updated on 9-Dec-2024

    Summary

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    Official Symbol
    polr3eprovided by ZNC
    Official Full Name
    polymerase (RNA) III (DNA directed) polypeptide Eprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-8462
    See related
    Ensembl:ENSDARG00000037358 AllianceGenome:ZFIN:ZDB-GENE-030131-8462
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    Sin; zgc:55592; wu:fb12d10; wu:fs42e03
    Summary
    Predicted to be involved in tRNA transcription by RNA polymerase III. Predicted to act upstream of or within DNA-templated transcription. Predicted to be located in nucleus. Predicted to be part of RNA polymerase III complex. Orthologous to human POLR3E (RNA polymerase III subunit E). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See polr3e in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 12 NC_007123.7 (1014418..1038507, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 12 NC_007123.6 (978831..998873, complement)

    Chromosome 12 - NC_007123.7Genomic Context describing neighboring genes Neighboring gene methyltransferase 9, His-X-His N1-histidine Neighboring gene cerebellar degeneration-related protein 2b Neighboring gene WD repeat domain phosphoinositide-interacting protein 1 Neighboring gene arf-GAP with dual PH domain-containing protein 1 Neighboring gene SRY-box transcription factor 8a

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. The zebrafish gene map defines ancestral vertebrate chromosomes. Woods IG, et al. Genome Res, 2005 Sep. PMID 16109975, Free PMC Article
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    acts_upstream_of_or_within DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of DNA-directed RNA polymerase complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of RNA polymerase III complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    DNA-directed RNA polymerase III subunit RPC5
    Names
    RNA polymerase III 80 kDa subunit RPC5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_212754.1 → NP_997919.1  DNA-directed RNA polymerase III subunit RPC5

      See identical proteins and their annotated locations for NP_997919.1

      Status: PROVISIONAL

      Source sequence(s)
      BC048877
      UniProtKB/TrEMBL
      Q7ZUL6
      Related
      ENSDARP00000126616.1, ENSDART00000152346.3
      Conserved Domains (1) summary
      pfam04801
      Location:6 → 433
      Sin_N; Sin-like protein conserved region

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007123.7 Reference GRCz11 Primary Assembly

      Range
      1014418..1038507 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068224531.1 → XP_068080632.1  DNA-directed RNA polymerase III subunit RPC5 isoform X1

      UniProtKB/TrEMBL
      A0A8M2BHA9, F1R866
      Related
      ENSDARP00000096063.3, ENSDART00000105292.5

    2. XM_005169428.5 → XP_005169485.1  DNA-directed RNA polymerase III subunit RPC5 isoform X1

      UniProtKB/TrEMBL
      A0A8M2BHA9, F1R866
      Conserved Domains (1) summary
      pfam04801
      Location:6 → 433
      Sin_N; Sin-like protein conserved region

    3. XM_068224530.1 → XP_068080631.1  DNA-directed RNA polymerase III subunit RPC5 isoform X1

      UniProtKB/TrEMBL
      A0A8M2BHA9, F1R866
    Nucleotide Protein Strain
    Heading Accession and Version

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