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    sidt2 SID1 transmembrane family, member 2 [ Danio rerio (zebrafish) ]

    Gene ID: 796833, updated on 9-Dec-2024

    Summary

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    Official Symbol
    sidt2provided by ZNC
    Official Full Name
    SID1 transmembrane family, member 2provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-7356
    See related
    Ensembl:ENSDARG00000045976 AllianceGenome:ZFIN:ZDB-GENE-030131-7356
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    cb320; sb:cb320; wu:fj10c08
    Summary
    Predicted to enable RNA transmembrane transporter activity and double-stranded RNA binding activity. Predicted to be involved in RNA transport. Predicted to be located in membrane. Predicted to be active in lysosome and plasma membrane. Is expressed in anterior axial hypoblast; hatching gland; mesoderm; polster; and yolk syncytial layer. Orthologous to human SIDT2 (SID1 transmembrane family member 2). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See sidt2 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    29
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 15 NC_007126.7 (47523023..47555331)
    105 previous assembly GRCz10 (GCF_000002035.5) 15 NC_007126.6 (47042876..47073071)

    Chromosome 15 - NC_007126.7Genomic Context describing neighboring genes Neighboring gene paired like homeobox 2A Neighboring gene inositol polyphosphate phosphatase-like 1a Neighboring gene uncharacterized LOC101884560 Neighboring gene SIK family kinase 3 Neighboring gene uncharacterized LOC101883079 Neighboring gene transmembrane protein 25

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Molecular evolution of melatonin receptor genes (mtnr) in vertebrates and its shedding light on mtnr1c. Li Y, et al. Gene, 2021 Feb 15. PMID 33164759
    2. The zebrafish gene map defines ancestral vertebrate chromosomes. Woods IG, et al. Genome Res, 2005 Sep. PMID 16109975, Free PMC Article
    3. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
    4. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    SID1 transmembrane family member 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007126.7 Reference GRCz11 Primary Assembly

      Range
      47523023..47555331
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021466513.2 → XP_021322188.1  SID1 transmembrane family member 2 isoform X1

      UniProtKB/TrEMBL
      A0A8M9P7I2
      Conserved Domains (1) summary
      pfam13965
      Location:217 → 894
      SID-1_RNA_chan; dsRNA-gated channel SID-1

    2. XM_021466515.2 → XP_021322190.1  SID1 transmembrane family member 2 isoform X3

      UniProtKB/TrEMBL
      A0A8M9PLX3
      Conserved Domains (1) summary
      pfam13965
      Location:217 → 875
      SID-1_RNA_chan; dsRNA-gated channel SID-1

    3. XM_021466514.2 → XP_021322189.1  SID1 transmembrane family member 2 isoform X2

      UniProtKB/TrEMBL
      A0A8M9PCM2
      Conserved Domains (1) summary
      pfam13965
      Location:217 → 890
      SID-1_RNA_chan; dsRNA-gated channel SID-1

    4. XM_021466516.2 → XP_021322191.1  SID1 transmembrane family member 2 isoform X4

      UniProtKB/TrEMBL
      A0A8M9PIX3
      Conserved Domains (1) summary
      pfam13965
      Location:217 → 871
      SID-1_RNA_chan; dsRNA-gated channel SID-1

    5. XM_021466517.2 → XP_021322192.1  SID1 transmembrane family member 2 isoform X5

      UniProtKB/TrEMBL
      A0A8M9NYU9
      Conserved Domains (1) summary
      pfam13965
      Location:170 → 847
      SID-1_RNA_chan; dsRNA-gated channel SID-1

    6. XM_068213804.1 → XP_068069905.1  SID1 transmembrane family member 2 isoform X6

      Related
      ENSDARP00000067582.7, ENSDART00000067583.7
    Nucleotide Protein
    Heading Accession and Version

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