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    zgc:111986 zgc:111986 [ Danio rerio (zebrafish) ]

    Gene ID: 553664, updated on 9-Dec-2024

    Summary

    Official Symbol
    zgc:111986provided by ZNC
    Official Full Name
    zgc:111986provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-050522-304
    See related
    Ensembl:ENSDARG00000093406 AllianceGenome:ZFIN:ZDB-GENE-050522-304
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    wu:fb59h04
    Summary
    Orthologous to human C6orf62 (chromosome 6 open reading frame 62). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
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    Genomic context

    See zgc:111986 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (31580205..31583154, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (31992892..31995841, complement)

    Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene tyrosyl-DNA phosphodiesterase 2b Neighboring gene acyl-CoA thioesterase 13 Neighboring gene geminin DNA replication inhibitor Neighboring gene RHO family interacting cell polarization regulator 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Markers

    Clone Names

    • MGC111986

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    uncharacterized protein C6orf62 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001020637.1NP_001018473.1  uncharacterized protein C6orf62 homolog

      See identical proteins and their annotated locations for NP_001018473.1

      Status: PREDICTED

      Source sequence(s)
      BC095633
      UniProtKB/TrEMBL
      Q502N2
      Related
      ENSDARP00000052182.4, ENSDART00000052183.5
      Conserved Domains (1) summary
      pfam15130
      Location:1227
      DUF4566; Domain of unknown function (DUF4566)

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007130.7 Reference GRCz11 Primary Assembly

      Range
      31580205..31583154 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018395052.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      533572..536511 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)