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    abcf1 ATP-binding cassette, sub-family F (GCN20), member 1 [ Danio rerio (zebrafish) ]

    Gene ID: 406467, updated on 9-Dec-2024

    Summary

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    Official Symbol
    abcf1provided by ZNC
    Official Full Name
    ATP-binding cassette, sub-family F (GCN20), member 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-050517-31
    See related
    Ensembl:ENSDARG00000031795 AllianceGenome:ZFIN:ZDB-GENE-050517-31
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:85667; wu:fb79c06; wu:fc39a05; wu:fj94a08
    Summary
    Predicted to enable ATP binding activity. Orthologous to human ABCF1 (ATP binding cassette subfamily F member 1). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See abcf1 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    27
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (30428898..30447658, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (30841585..30860324, complement)

    Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene anterior gradient 2 Neighboring gene protein phosphatase 1, regulatory subunit 10 Neighboring gene mitochondrial ribosomal protein S18B Neighboring gene si:ch211-215a10.4 Neighboring gene BCL2 associated athanogene 6, like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Gene-breaking transposon mutagenesis reveals an essential role for histone H2afza in zebrafish larval development. Sivasubbu S, et al. Mech Dev, 2006 Jul. PMID 16859902
    2. A genome-wide survey of Major Histocompatibility Complex (MHC) genes and their paralogues in zebrafish. Sambrook JG, et al. BMC Genomics, 2005 Nov 4. PMID 16271140, Free PMC Article
    3. Evolutionary and Expression Analyses Show Co-option of khdrbs Genes for Origin of Vertebrate Brain. Wang S, et al. Front Genet, 2017. PMID 29354154, Free PMC Article
    4. Evolution of the vertebrate ABC gene family: analysis of gene birth and death. Annilo T, et al. Genomics, 2006 Jul. PMID 16631343
    5. Evolution of the ATP-binding cassette (ABC) transporter superfamily in vertebrates. Dean M, et al. Annu Rev Genomics Hum Genet, 2005. PMID 16124856

    See all (14) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables ATP binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    ATP-binding cassette sub-family F member 1
    Names
    ATP-binding cassette 50
    TNF-alpha stimulated ABC protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_213186.1 → NP_998351.1  ATP-binding cassette sub-family F member 1

      See identical proteins and their annotated locations for NP_998351.1

      Status: PROVISIONAL

      Source sequence(s)
      BC068351
      UniProtKB/TrEMBL
      Q6NV15
      Related
      ENSDARP00000048976.4, ENSDART00000048977.6
      Conserved Domains (4) summary
      cd03221
      Location:336 → 557
      ABCF_EF-3; ATP-binding cassette domain of elongation factor 3, subfamily F
      COG0488
      Location:334 → 865
      Uup; ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
      pfam12848
      Location:551 → 604
      ABC_tran_Xtn; ABC transporter
      cl21455
      Location:739 → 806
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007130.7 Reference GRCz11 Primary Assembly

      Range
      30428898..30447658 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021468041.2 → XP_021323716.1  ATP-binding cassette sub-family F member 1 isoform X1

      UniProtKB/TrEMBL
      A0A8M9PN87
      Conserved Domains (1) summary
      COG0488
      Location:333 → 864
      Uup; ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

    2. XM_021468042.2 → XP_021323717.1  ATP-binding cassette sub-family F member 1 isoform X2

      UniProtKB/TrEMBL
      A0A2R8QRC7, A0A8M9P1S9
      Related
      ENSDARP00000155687.1, ENSDART00000191237.1
      Conserved Domains (1) summary
      COG0488
      Location:314 → 845
      Uup; ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
    Nucleotide Protein Strain
    Heading Accession and Version

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