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    ilf3a interleukin enhancer binding factor 3a [ Danio rerio (zebrafish) ]

    Gene ID: 324431, updated on 9-Dec-2024

    Summary

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    Official Symbol
    ilf3aprovided by ZNC
    Official Full Name
    interleukin enhancer binding factor 3aprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-3151
    See related
    Ensembl:ENSDARG00000058660 AllianceGenome:ZFIN:ZDB-GENE-030131-3151
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fc28f07; wu:fc28f07; wu:fi34h10; zgc:113842
    Summary
    Predicted to enable double-stranded RNA binding activity and single-stranded RNA binding activity. Predicted to be located in cytoplasm and nucleus. Orthologous to human ILF3 (interleukin enhancer binding factor 3). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See ilf3a in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 6 NC_007117.7 (8365725..8392132, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 6 NC_007117.6 (8130186..8156592, complement)

    Chromosome 6 - NC_007117.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137490183 Neighboring gene acid phosphatase 5a, tartrate resistant Neighboring gene prostaglandin E receptor 1a (subtype EP1) Neighboring gene uncharacterized LOC137495918 Neighboring gene WIZ zinc finger a

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Deconvoluting Wavelengths Leading to Fluorescent Light Induced Inflammation and Cellular Stress in Zebrafish (Danio rerio). Boswell M, et al. Sci Rep, 2020 Feb 24. PMID 32094353, Free PMC Article
    2. A Toolbox for Efficient Proximity-Dependent Biotinylation in Zebrafish Embryos. Rosenthal SM, et al. Mol Cell Proteomics, 2021. PMID 34332124, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC113842

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables double-stranded RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables single-stranded RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    interleukin enhancer-binding factor 3a

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001030065.1 → NP_001025236.1  interleukin enhancer-binding factor 3a

      See identical proteins and their annotated locations for NP_001025236.1

      Status: PROVISIONAL

      Source sequence(s)
      BC096956
      UniProtKB/TrEMBL
      Q4V9C6
      Related
      ENSDARP00000076002.4, ENSDART00000081561.6
      Conserved Domains (2) summary
      smart00358
      Location:459 → 523
      DSRM; Double-stranded RNA binding motif
      cl02675
      Location:165 → 418
      DZF; DZF domain

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007117.7 Reference GRCz11 Primary Assembly

      Range
      8365725..8392132 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068221651.1 → XP_068077752.1  interleukin enhancer-binding factor 3a isoform X2

      UniProtKB/TrEMBL
      A0A8M2BD00

    2. XM_005165723.5 → XP_005165780.1  interleukin enhancer-binding factor 3a isoform X2

      UniProtKB/TrEMBL
      A0A8M2BD00
      Conserved Domains (2) summary
      smart00358
      Location:458 → 522
      DSRM; Double-stranded RNA binding motif
      cl02675
      Location:165 → 418
      DZF; DZF domain

    3. XM_009302153.4 → XP_009300428.1  interleukin enhancer-binding factor 3a isoform X1

      UniProtKB/TrEMBL
      A0A8M3BA65, F1QZW7
      Conserved Domains (2) summary
      smart00358
      Location:459 → 523
      DSRM; Double-stranded RNA binding motif
      cl02675
      Location:165 → 418
      DZF; DZF domain

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394626.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      218981..241414 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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