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    • Showing Current items.

    zgc:171977 zgc:171977 [ Danio rerio (zebrafish) ]

    Gene ID: 100124621, updated on 12-Sep-2024

    Summary

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    Official Symbol
    zgc:171977provided by ZNC
    Official Full Name
    zgc:171977provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-070822-24
    See related
    Ensembl:ENSDARG00000092885 AllianceGenome:ZFIN:ZDB-GENE-070822-24
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
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    Genomic context

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    See zgc:171977 in Genome Data Viewer
    Location:
    chromosome: 24
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 24 NC_007135.7 (9976628..9979342, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 24 NC_007135.6 (9836242..9838956, complement)

    Chromosome 24 - NC_007135.7Genomic Context describing neighboring genes Neighboring gene carnitine deficiency-associated gene expressed in ventricle 3 Neighboring gene VPS41 subunit of HOPS complex Neighboring gene uncharacterized LOC100537597 Neighboring gene zgc:152652

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC100124621

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001102647.2 → NP_001096117.2  uncharacterized protein LOC100124621 precursor

      Status: VALIDATED

      Source sequence(s)
      BX247886, BX571823
      UniProtKB/TrEMBL
      A0A8M1NFK4, F1R3X6
      Related
      ENSDARP00000112994.1, ENSDART00000138576.2
      Conserved Domains (1) summary
      PRK10263
      Location:404 → 651
      PRK10263; DNA translocase FtsK; Provisional

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007135.7 Reference GRCz11 Primary Assembly

      Range
      9976628..9979342 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068217001.1 → XP_068073102.1  uncharacterized protein LOC100124621 isoform X1

      Related
      ENSDARP00000150481.1, ENSDART00000191206.1
    Nucleotide Protein
    Heading Accession and Version

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