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    si:dkeyp-121d4.3 si:dkeyp-121d4.3 [ Danio rerio (zebrafish) ]

    Gene ID: 100004621, updated on 28-Oct-2024

    Summary

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    Official Symbol
    si:dkeyp-121d4.3provided by ZNC
    Official Full Name
    si:dkeyp-121d4.3provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-130530-962
    See related
    Ensembl:ENSDARG00000089355 AllianceGenome:ZFIN:ZDB-GENE-130530-962
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Orthologs
    all
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    Genomic context

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    See si:dkeyp-121d4.3 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 13 NC_007124.7 (4338882..4366964, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 13 NC_007124.6 (4210290..4238588, complement)

    Chromosome 13 - NC_007124.7Genomic Context describing neighboring genes Neighboring gene male-enhanced antigen 1 Neighboring gene protein phosphatase 2, regulatory subunit B', delta Neighboring gene zinc finger protein 318 Neighboring gene SFT2 domain containing 1 Neighboring gene proline rich 18

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Regulation of cytochrome P450 expression in a novel liver cell line from zebrafish (Brachydanio rerio). Miranda CL, et al. Arch Biochem Biophys, 1993 Sep. PMID 8373170
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein si:dkeyp-121d4.3
    Names
    zmp:0000000959

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007124.7 Reference GRCz11 Primary Assembly

      Range
      4338882..4366964 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005156511.5 → XP_005156568.1  uncharacterized protein si:dkeyp-121d4.3 isoform X2

      UniProtKB/TrEMBL
      A0A8M2B3E7
      Conserved Domains (3) summary
      cd00229
      Location:1829 → 2002
      SGNH_hydrolase; SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely ...
      pfam07271
      Location:81 → 225
      Cytadhesin_P30; Cytadhesin P30/P32
      cl00125
      Location:154 → 193
      RHOD; Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins ...

    2. XM_009307078.4 → XP_009305353.1  uncharacterized protein si:dkeyp-121d4.3 isoform X1

      UniProtKB/TrEMBL
      A0A8M3AYU5, E7F429
      Related
      ENSDARP00000105767.1, ENSDART00000124716.3
      Conserved Domains (3) summary
      cd00229
      Location:1830 → 2003
      SGNH_hydrolase; SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely ...
      pfam07271
      Location:81 → 225
      Cytadhesin_P30; Cytadhesin P30/P32
      cl00125
      Location:154 → 193
      RHOD; Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins ...
    Nucleotide Protein Strain
    Heading Accession and Version

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