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    zgc:112964 zgc:112964 [ Danio rerio (zebrafish) ]

    Gene ID: 503764, updated on 9-Dec-2024

    Summary

    Official Symbol
    zgc:112964provided by ZNC
    Official Full Name
    zgc:112964provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-050306-47
    See related
    Ensembl:ENSDARG00000101200 AllianceGenome:ZFIN:ZDB-GENE-050306-47
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fb93d07; wu:fb93d07; si:ch73-329n5.4
    Summary
    Predicted to act upstream of or within cell-matrix adhesion. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    NEW
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    Genomic context

    See zgc:112964 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 12 NC_007123.7 (43669293..43685798, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 12 NC_007123.6 (43922558..43939063, complement)

    Chromosome 12 - NC_007123.7Genomic Context describing neighboring genes Neighboring gene clarin 3 Neighboring gene forkhead box i1 Neighboring gene mucin-4-like Neighboring gene si:ch73-329n5.6

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Markers

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    acts_upstream_of_or_within cell-matrix adhesion IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    uncharacterized protein LOC503764

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001327869.1NP_001314798.1  uncharacterized protein LOC503764 precursor

      Status: VALIDATED

      Source sequence(s)
      AI722397, CU914622
      UniProtKB/TrEMBL
      A0A0R4IB81, A0A8M1P350
      Related
      ENSDARP00000132074.1, ENSDART00000170723.2
      Conserved Domains (1) summary
      cl02648
      Location:104241
      NIDO; Nidogen-like

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007123.7 Reference GRCz11 Primary Assembly

      Range
      43669293..43685798 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001013342.1: Suppressed sequence

      Description
      NM_001013342.1: This RefSeq was removed because it is a nonsense-mediated mRNA decay (NMD) candidate.