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    taf1c TATA-box binding protein associated factor, RNA polymerase I subunit C [ Danio rerio (zebrafish) ]

    Gene ID: 336342, updated on 9-Dec-2024

    Summary

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    Official Symbol
    taf1cprovided by ZNC
    Official Full Name
    TATA-box binding protein associated factor, RNA polymerase I subunit Cprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-8286
    See related
    Ensembl:ENSDARG00000096310 AllianceGenome:ZFIN:ZDB-GENE-030131-8286
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fj64h06; wu:fj64h06
    Summary
    Predicted to enable RNA polymerase I core promoter sequence-specific DNA binding activity. Predicted to act upstream of or within transcription by RNA polymerase I. Predicted to be active in fibrillar center. Orthologous to human TAF1C (TATA-box binding protein associated factor, RNA polymerase I subunit C). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See taf1c in Genome Data Viewer
    Location:
    chromosome: 21
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 21 NC_007132.7 (5801344..5838539, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 21 NC_007132.6 (5695981..5731611, complement)

    Chromosome 21 - NC_007132.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137488778 Neighboring gene starch binding domain 1 Neighboring gene shroom family member 3 Neighboring gene cyclin I Neighboring gene cyclin G2 Neighboring gene proteinase-activated receptor 3 Neighboring gene WD repeat domain 38

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    acts_upstream_of_or_within transcription by RNA polymerase I IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    TATA box-binding protein-associated factor RNA polymerase I subunit C; TATA-box binding protein associated factor, RNA polymerase I subunit C

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007132.7 Reference GRCz11 Primary Assembly

      Range
      5801344..5838539 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002665873.7 → XP_002665919.3  TATA box-binding protein-associated factor RNA polymerase I subunit C

      UniProtKB/TrEMBL
      A0A8M1RRS6
      Related
      ENSDARP00000125622.1, ENSDART00000150914.3
    Nucleotide Protein Strain
    Heading Accession and Version

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