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    • Showing Current items.

    si:ch211-250e5.16 si:ch211-250e5.16 [ Danio rerio (zebrafish) ]

    Gene ID: 562807, updated on 9-Dec-2024

    Summary

    Official Symbol
    si:ch211-250e5.16provided by ZNC
    Official Full Name
    si:ch211-250e5.16provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-6052
    See related
    Ensembl:ENSDARG00000116290 AllianceGenome:ZFIN:ZDB-GENE-030131-6052
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fi32c03; wu:fi32c03
    Summary
    Predicted to enable carbohydrate binding activity. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

    See si:ch211-250e5.16 in Genome Data Viewer
    Location:
    chromosome: 22
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 22 NC_007133.7 (25754026..25755294)
    105 previous assembly GRCz10 (GCF_000002035.5) 22 NC_007133.6 (25734129..25735396)

    Chromosome 22 - NC_007133.7Genomic Context describing neighboring genes Neighboring gene novel rhamnose binding lectin Neighboring gene D-galactoside-specific lectin-like Neighboring gene uncharacterized LOC100535847 Neighboring gene vasorin a

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General protein information

    Preferred Names
    uncharacterized protein LOC562807

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001100404.2NP_001093874.1  uncharacterized protein LOC562807 precursor

      See identical proteins and their annotated locations for NP_001093874.1

      Status: VALIDATED

      Source sequence(s)
      AL929192
      UniProtKB/TrEMBL
      A7E2K6, F1QBU2
      Related
      ENSDARP00000144774.1, ENSDART00000188417.1
      Conserved Domains (1) summary
      pfam02140
      Location:42124
      Gal_Lectin; Galactose binding lectin domain

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007133.7 Reference GRCz11 Primary Assembly

      Range
      25754026..25755294
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018395111.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      16547..17815
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)