U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    gid8b GID complex subunit 8 homolog b (S. cerevisiae) [ Danio rerio (zebrafish) ]

    Gene ID: 566067, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    gid8bprovided by ZNC
    Official Full Name
    GID complex subunit 8 homolog b (S. cerevisiae)provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030515-4
    See related
    Ensembl:ENSDARG00000037589 AllianceGenome:ZFIN:ZDB-GENE-030515-4
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    Twa1; cb482; c20orf11
    Summary
    Involved in positive regulation of canonical Wnt signaling pathway. Acts upstream of or within determination of dorsal identity. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including endoderm; hatching gland; mesoderm; notochord; and tail bud. Orthologous to human GID8 (GID complex subunit 8 homolog). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See gid8b in Genome Data Viewer
    Location:
    chromosome: 23
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 23 NC_007134.7 (17509732..17520931)
    105 previous assembly GRCz10 (GCF_000002035.5) 23 NC_007134.6 (17583432..17594588)

    Chromosome 23 - NC_007134.7Genomic Context describing neighboring genes Neighboring gene tripartite motif containing 101 Neighboring gene DnaJ (Hsp40) homolog, subfamily C, member 5ab Neighboring gene uncharacterized LOC137489109 Neighboring gene solute carrier family 17 member 9b Neighboring gene basic helix-loop-helix family, member e23

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Twa1/Gid8 is a β-catenin nuclear retention factor in Wnt signaling and colorectal tumorigenesis. Lu Y, et al. Cell Res, 2017 Dec. PMID 28829046, Free PMC Article
    2. Evolution of gene function and regulatory control after whole-genome duplication: comparative analyses in vertebrates. Kassahn KS, et al. Genome Res, 2009 Aug. PMID 19439512, Free PMC Article
    3. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
    4. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    acts_upstream_of_or_within Wnt signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within determination of dorsal identity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in positive regulation of canonical Wnt signaling pathway IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in positive regulation of canonical Wnt signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    glucose-induced degradation protein 8-B homolog
    Names
    two hybrid-associated protein 1 with RanBPM

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001386504.1 → NP_001373433.1  glucose-induced degradation protein 8-B homolog

      Status: VALIDATED

      Source sequence(s)
      BX649300, CR407550
      UniProtKB/Swiss-Prot
      E7FGY2, F8W234
      Related
      ENSDARP00000124870.1, ENSDART00000148457.3
      Conserved Domains (2) summary
      smart00667
      Location:25 → 58
      LisH; Lissencephaly type-1-like homology motif
      pfam10607
      Location:64 → 208
      CLTH; CTLH/CRA C-terminal to LisH motif domain

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007134.7 Reference GRCz11 Primary Assembly

      Range
      17509732..17520931
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017353703.3 → XP_017209192.1  glucose-induced degradation protein 8-B homolog isoform X1

      UniProtKB/Swiss-Prot
      E7FGY2, F8W234
      Conserved Domains (2) summary
      smart00667
      Location:25 → 58
      LisH; Lissencephaly type-1-like homology motif
      pfam10607
      Location:64 → 208
      CLTH; CTLH/CRA C-terminal to LisH motif domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    E7FGY2.2 GenPept UniProtKB/Swiss-Prot:E7FGY2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.