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    rps6 ribosomal protein S6 [ Danio rerio (zebrafish) ]

    Gene ID: 445028, updated on 9-Dec-2024

    Summary

    Official Symbol
    rps6provided by ZNC
    Official Full Name
    ribosomal protein S6provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040801-8
    See related
    Ensembl:ENSDARG00000019778 AllianceGenome:ZFIN:ZDB-GENE-040801-8
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:92237; wu:fa92e06; wu:fb64g06
    Summary
    Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of ribonucleoprotein complex. Is expressed in liver. Orthologous to human RPS6 (ribosomal protein S6). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
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    Genomic context

    See rps6 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (45043767..45049561, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (44342464..44348258, complement)

    Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene DnaJ heat shock protein family (Hsp40) member A1 Neighboring gene SMU1 DNA replication regulator and spliceosomal factor b Neighboring gene bloodthirsty-related gene family, member 1 Neighboring gene adipose secreted signaling protein

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Pathways from PubChem

    General gene information

    Markers

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    acts_upstream_of_or_within translation IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    part_of ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
     
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    small ribosomal subunit protein eS6

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001003728.1NP_001003728.1  small ribosomal subunit protein eS6

      See identical proteins and their annotated locations for NP_001003728.1

      Status: PROVISIONAL

      Source sequence(s)
      BC075953
      UniProtKB/TrEMBL
      A8KBP3, F6NS62, Q6DHL6
      Related
      ENSDARP00000011148.6, ENSDART00000023336.9
      Conserved Domains (1) summary
      cl00931
      Location:1215
      Ribosomal_S6e; Ribosomal protein S6e

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007112.7 Reference GRCz11 Primary Assembly

      Range
      45043767..45049561 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)