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    kif20bb kinesin family member 20Bb [ Danio rerio (zebrafish) ]

    Gene ID: 100007502, updated on 9-Dec-2024

    Summary

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    Official Symbol
    kif20bbprovided by ZNC
    Official Full Name
    kinesin family member 20Bbprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-9684
    See related
    Ensembl:ENSDARG00000040110 AllianceGenome:ZFIN:ZDB-GENE-030131-9684
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    cb152; sb:cb152
    Summary
    Predicted to enable ATP binding activity; microtubule binding activity; and microtubule motor activity. Predicted to be involved in system development. Predicted to act upstream of or within microtubule-based movement. Predicted to be located in cytoplasm and cytoskeleton. Is expressed in nervous system; pectoral fin musculature; pharyngeal arch 3-7 skeleton; and proliferative region. Orthologous to human KIF20B (kinesin family member 20B). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See kif20bb in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    30
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 12 NC_007123.7 (16452560..16479730)
    105 previous assembly GRCz10 (GCF_000002035.5) 12 NC_007123.6 (16403742..16430497)

    Chromosome 12 - NC_007123.7Genomic Context describing neighboring genes Neighboring gene polycomb group ring finger 5b Neighboring gene ankyrin repeat domain 1b (cardiac muscle) Neighboring gene ribonuclease P/MRP 30 subunit Neighboring gene uncharacterized LOC108191791 Neighboring gene 5-hydroxytryptamine receptor 7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Combined effects of polystyrene microplastics and natural organic matter on the accumulation and toxicity of copper in zebrafish. Qiao R, et al. Sci Total Environ, 2019 Sep 10. PMID 31117014
    2. Characterization of zebrafish (Danio rerio) muscle ankyrin repeat proteins reveals their conserved response to endurance exercise. Boskovic S, et al. PLoS One, 2018. PMID 30252882, Free PMC Article
    3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables microtubule binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables microtubule motor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within microtubule-based movement IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in system development IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    kinesin-like protein KIF20B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007123.7 Reference GRCz11 Primary Assembly

      Range
      16452560..16479730
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003199582.6 → XP_003199630.3  kinesin-like protein KIF20B isoform X1

      UniProtKB/TrEMBL
      A0A8M1RMD4, A0A8M9QMV5, X1WGN9
      Related
      ENSDARP00000129397.2, ENSDART00000058665.7
      Conserved Domains (4) summary
      TIGR04523
      Location:581 → 1254
      Mplasa_alph_rch; helix-rich Mycoplasma protein
      cl22853
      Location:42 → 462
      Motor_domain; Myosin and Kinesin motor domain
      pfam00225
      Location:49 → 464
      Kinesin; Kinesin motor domain
      pfam15272
      Location:683 → 776
      BBP1_C; Spindle pole body component BBP1, C-terminal

    2. XM_009306554.4 → XP_009304829.1  kinesin-like protein KIF20B isoform X2

      UniProtKB/TrEMBL
      A0A8M3B4I2, A0A8M9QJ37
      Conserved Domains (4) summary
      cl22853
      Location:42 → 462
      Motor_domain; Myosin and Kinesin motor domain
      pfam00038
      Location:711 → 1003
      Filament; Intermediate filament protein
      pfam00225
      Location:49 → 464
      Kinesin; Kinesin motor domain
      pfam15272
      Location:683 → 776
      BBP1_C; Spindle pole body component BBP1, C-terminal
    Nucleotide Protein
    Heading Accession and Version

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