swi5 SWI5 homologous recombination repair protein [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: swi5provided by ZNC
Official Full Name: SWI5 homologous recombination repair proteinprovided by ZNC
Primary source: ZFIN:ZDB-GENE-091204-368
See related: Ensembl:ENSDARG00000078492 AllianceGenome:ZFIN:ZDB-GENE-091204-368
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: si:ch211-264f7.1
Summary: Predicted to be involved in double-strand break repair via homologous recombination. Predicted to act upstream of or within DNA repair. Predicted to be part of Swi5-Sfr1 complex and Swi5-Swi2 complex. Orthologous to human SWI5 (SWI5 homologous recombination repair protein). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 10

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	10	NC_007121.7 (10728977..10737263)
105	previous assembly	GRCz10 (GCF_000002035.5)	10	NC_007121.6 (10770739..10779025)

Chromosome 10 - NC_007121.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Process	Evidence Code	Pubs
acts_upstream_of_or_within DNA damage response	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within DNA repair	IEA Inferred from Electronic Annotation more info
involved_in double-strand break repair via homologous recombination	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
part_of Swi5-Sfr1 complex	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: DNA repair protein SWI5 homolog

Names: SWI5 recombination repair homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001326527.1 → NP_001313456.1 DNA repair protein SWI5 homolog

Status: VALIDATED

Source sequence(s)

CT027791

UniProtKB/TrEMBL

A0A8M1P2S3, E7FF22

Related

ENSDARP00000100791.3, ENSDART00000109282.4

Conserved Domains (1) summary

pfam07061
Location:66 → 139

Swi5; Swi5