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    cachd1 cache domain containing 1 [ Danio rerio (zebrafish) ]

    Gene ID: 794807, updated on 9-Dec-2024

    Summary

    Official Symbol
    cachd1provided by ZNC
    Official Full Name
    cache domain containing 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-100819-3
    See related
    Ensembl:ENSDARG00000061590 AllianceGenome:ZFIN:ZDB-GENE-100819-3
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to enable voltage-gated calcium channel activity. Predicted to be located in membrane. Predicted to be part of voltage-gated calcium channel complex. Orthologous to human CACHD1 (cache domain containing 1). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
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    Genomic context

    See cachd1 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    27
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 6 NC_007117.7 (31590751..31739941, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 6 NC_007117.6 (31603733..31753090, complement)

    Chromosome 6 - NC_007117.7Genomic Context describing neighboring genes Neighboring gene Janus kinase 1 Neighboring gene ribonucleoprotein, PTB-binding 2 Neighboring gene receptor tyrosine kinase-like orphan receptor 1 Neighboring gene phosphoglucomutase 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

    General gene information

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables voltage-gated calcium channel activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    part_of voltage-gated calcium channel complex IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    VWFA and cache domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007117.7 Reference GRCz11 Primary Assembly

      Range
      31590751..31739941 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001334793.8XP_001334829.3  VWFA and cache domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8M1PS05, E7F5Q0
      Related
      ENSDARP00000082397.4, ENSDART00000087964.7
      Conserved Domains (3) summary
      pfam02743
      Location:469536
      Cache_1; Cache domain
      pfam08399
      Location:102217
      VWA_N; VWA N-terminal
      cl00057
      Location:226355
      vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394651.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      220431..311794 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021471791.2XP_021327466.1  VWFA and cache domain-containing protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8M9PYP8
      Conserved Domains (2) summary
      pfam08399
      Location:3670
      VWA_N; VWA N-terminal
      cl00057
      Location:79208
      vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...