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    nsrp1 nuclear speckle splicing regulatory protein 1 [ Danio rerio (zebrafish) ]

    Gene ID: 323926, updated on 9-Dec-2024

    Summary

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    Official Symbol
    nsrp1provided by ZNC
    Official Full Name
    nuclear speckle splicing regulatory protein 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-2646
    See related
    Ensembl:ENSDARG00000015221 AllianceGenome:ZFIN:ZDB-GENE-030131-2646
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    ccdc55; fc14d05; wu:fc14d05; zgc:152777
    Summary
    Predicted to act upstream of or within regulation of alternative mRNA splicing, via spliceosome. Orthologous to human NSRP1 (nuclear speckle splicing regulatory protein 1). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See nsrp1 in Genome Data Viewer
    Location:
    chromosome: 21
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 21 NC_007132.7 (40402508..40413166, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 21 NC_007132.6 (40378955..40389613, complement)

    Chromosome 21 - NC_007132.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100534731 Neighboring gene small nucleolar RNA SNORD65 Neighboring gene small nucleolar RNA SNORD65 Neighboring gene slingshot protein phosphatase 2b Neighboring gene coronin 6 Neighboring gene protein ABHD15

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Evolution of the tbx6/16 subfamily genes in vertebrates: insights from zebrafish. Ahn D, et al. Mol Biol Evol, 2012 Dec. PMID 22915831
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of alternative mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    nuclear speckle splicing regulatory protein 1
    Names
    coiled-coil domain containing 55
    coiled-coil domain-containing protein 55

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001077430.2 → NP_001070898.1  nuclear speckle splicing regulatory protein 1

      See identical proteins and their annotated locations for NP_001070898.1

      Status: PROVISIONAL

      Source sequence(s)
      BC124124
      UniProtKB/Swiss-Prot
      Q2YDS6, Q568R1, Q6DH52
      UniProtKB/TrEMBL
      Q05AP3
      Related
      ENSDARP00000013430.6, ENSDART00000003221.8
      Conserved Domains (2) summary
      pfam09745
      Location:56 → 175
      DUF2040; Coiled-coil domain-containing protein 55 (DUF2040)
      pfam15336
      Location:348 → 386
      Auts2; Autism susceptibility gene 2 protein

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007132.7 Reference GRCz11 Primary Assembly

      Range
      40402508..40413166 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068215782.1 → XP_068071883.1  nuclear speckle splicing regulatory protein 1 isoform X1

    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q568R1.2 GenPept UniProtKB/Swiss-Prot:Q568R1

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