rbm12bb RNA binding motif protein 12Bb [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: rbm12bbprovided by ZNC
Official Full Name: RNA binding motif protein 12Bbprovided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-6428
See related: Ensembl:ENSDARG00000079717 AllianceGenome:ZFIN:ZDB-GENE-030131-6428
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: rbm12b; fi89g10; zgc:56148; wu:fi89g10; si:ch211-193p21.4
Summary: Predicted to enable RNA binding activity. Predicted to be involved in regulation of RNA splicing. Predicted to be part of ribonucleoprotein complex. Predicted to be active in nucleoplasm. Orthologous to human RBM12B (RNA binding motif protein 12B). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 16

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	16	NC_007127.7 (16232621..16237860, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	16	NC_007127.6 (16324644..16329883, complement)

Chromosome 16 - NC_007127.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables RNA binding	IBA Inferred from Biological aspect of Ancestor more info
enables RNA binding	IEA Inferred from Electronic Annotation more info
enables nucleic acid binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in regulation of RNA splicing	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in nucleoplasm	IBA Inferred from Biological aspect of Ancestor more info
part_of ribonucleoprotein complex	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: RNA binding motif protein 12Bb

Names: RNA binding motif protein 12B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001290140.1 → NP_001277069.1 RNA binding motif protein 12Bb

Status: VALIDATED

Source sequence(s)

BX321920

UniProtKB/TrEMBL

A0A8M1P6I4, E7F6E2

Related

ENSDARP00000097607.3, ENSDART00000111912.4

Conserved Domains (5) summary

COG0724
Location:521 → 682

RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]

cd12515
Location:609 → 683

RRM5_RBM12_like; RNA recognition motif 5 in RNA-binding protein RBM12, RBM12B and similar proteins

cd12744
Location:2 → 80

RRM1_RBM12B; RNA recognition motif 1 in RNA-binding protein 12B (RBM12B) and similar proteins

cd12746
Location:157 → 234

RRM2_RBM12B; RNA recognition motif 2 in RNA-binding protein 12B (RBM12B) and similar proteins

cl17169
Location:275 → 355

RRM_SF; RNA recognition motif (RRM) superfamily

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007127.7 Reference GRCz11 Primary Assembly

Range

16232621..16237860 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

NM_199905.1: Suppressed sequence

Description

NM_199905.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.