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    ifi44a1 interferon induced protein 44a1 [ Danio rerio (zebrafish) ]

    Gene ID: 100148554, updated on 9-Dec-2024

    Summary

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    Official Symbol
    ifi44a1provided by ZNC
    Official Full Name
    interferon induced protein 44a1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-090312-156
    See related
    Ensembl:ENSDARG00000029720 AllianceGenome:ZFIN:ZDB-GENE-090312-156
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    si:dkeyp-9d4.2
    Summary
    Predicted to enable GTP binding activity. Predicted to be involved in immune response. Orthologous to human IFI44 (interferon induced protein 44) and IFI44L (interferon induced protein 44 like). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See ifi44a1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (8017069..8020590, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (7332498..7336479, complement)

    Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene interferon-induced protein 44-like Neighboring gene interferon induced protein 44a3 Neighboring gene si:dkeyp-9d4.3 Neighboring gene solute carrier family 5 member 10 Neighboring gene family with sequence similarity 83 member Gb

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Understanding complex dynamics of behavioral, neurochemical and transcriptomic changes induced by prolonged chronic unpredictable stress in zebrafish. Demin KA, et al. Sci Rep, 2020 Nov 17. PMID 33203921, Free PMC Article
    2. IFN-Stimulated Genes in Zebrafish and Humans Define an Ancient Arsenal of Antiviral Immunity. Levraud JP, et al. J Immunol, 2019 Dec 15. PMID 31732531
    3. Contrasted innate responses to two viruses in zebrafish: insights into the ancestral repertoire of vertebrate IFN-stimulated genes. Briolat V, et al. J Immunol, 2014 May 1. PMID 24683187
    4. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in immune response IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    interferon induced protein 44a1; interferon-induced protein 44-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007112.7 Reference GRCz11 Primary Assembly

      Range
      8017069..8020590 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009306148.4 → XP_009304423.1  interferon-induced protein 44-like

      UniProtKB/TrEMBL
      A0A8M3B469, E7F125
      Related
      ENSDARP00000121002.1, ENSDART00000143881.2
      Conserved Domains (1) summary
      cd00882
      Location:53 → 241
      Ras_like_GTPase; Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)
    Nucleotide Protein
    Heading Accession and Version

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