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    dhx32a DEAH (Asp-Glu-Ala-His) box polypeptide 32a [ Danio rerio (zebrafish) ]

    Gene ID: 100006246, updated on 9-Dec-2024

    Summary

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    Official Symbol
    dhx32aprovided by ZNC
    Official Full Name
    DEAH (Asp-Glu-Ala-His) box polypeptide 32aprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-130613-6
    See related
    Ensembl:ENSDARG00000077461 AllianceGenome:ZFIN:ZDB-GENE-130613-6
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to enable RNA binding activity and helicase activity. Predicted to be part of spliceosomal complex. Orthologous to human DHX32 (DEAH-box helicase 32 (putative)). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See dhx32a in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 12 NC_007123.7 (45150709..45189108)
    105 previous assembly GRCz10 (GCF_000002035.5) 12 NC_007123.6 (44772205..44818316)

    Chromosome 12 - NC_007123.7Genomic Context describing neighboring genes Neighboring gene ADAM metallopeptidase domain 12 Neighboring gene fibronectin type III and ankyrin repeat domains 1 Neighboring gene uncharacterized LOC101885582 Neighboring gene BRCA2 and CDKN1A interacting protein Neighboring gene WW domain binding protein 2 Neighboring gene tripartite motif containing 65

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. ADAM12-deficient zebrafish exhibit retardation in body growth at the juvenile stage without developmental defects. Tokumasu Y, et al. Dev Growth Differ, 2016 May. PMID 27185351
    2. Novel eye genes systematically discovered through an integrated analysis of mouse transcriptomes and phenome. Chiang CY, et al. Comput Struct Biotechnol J, 2020. PMID 31934309, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 32a
    Names
    DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 32

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001202472.3 → NP_001189401.3  DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 32a

      Status: VALIDATED

      Source sequence(s)
      CU463233, FO744864
      UniProtKB/TrEMBL
      A0A8M1NYY8
      Related
      ENSDARP00000103200.3, ENSDART00000112750.4
      Conserved Domains (2) summary
      COG1643
      Location:14 → 610
      HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]
      pfam07717
      Location:569 → 678
      OB_NTP_bind; Oligonucleotide/oligosaccharide-binding (OB)-fold

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007123.7 Reference GRCz11 Primary Assembly

      Range
      45150709..45189108
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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