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    atp5pb ATP synthase peripheral stalk-membrane subunit b [ Danio rerio (zebrafish) ]

    Gene ID: 449787, updated on 9-Dec-2024

    Summary

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    Official Symbol
    atp5pbprovided by ZNC
    Official Full Name
    ATP synthase peripheral stalk-membrane subunit bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-041010-33
    See related
    Ensembl:ENSDARG00000011553 AllianceGenome:ZFIN:ZDB-GENE-041010-33
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    atp5f1; fb59g11; fj08b08; wu:fb59g11; wu:fj08b08; zgc:101887
    Summary
    Predicted to enable proton transmembrane transporter activity. Predicted to contribute to proton-transporting ATP synthase activity, rotational mechanism. Predicted to be involved in proton motive force-driven ATP synthesis. Predicted to act upstream of or within proton transmembrane transport. Predicted to be located in mitochondrial inner membrane. Predicted to be part of proton-transporting ATP synthase complex, coupling factor F(o). Is expressed in heart and male organism. Orthologous to human ATP5PB (ATP synthase peripheral stalk-membrane subunit b). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See atp5pb in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 8 NC_007119.7 (25330403..25336180, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 8 NC_007119.6 (25311264..25317041, complement)

    Chromosome 8 - NC_007119.7Genomic Context describing neighboring genes Neighboring gene glutathione S-transferase mu tandem duplicate 3 Neighboring gene EPS8 signaling adaptor L3b Neighboring gene TRAF3 interacting protein 3 Neighboring gene deoxyribonuclease I-like 1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Mitochondrial energetic metabolism perturbations in skeletal muscles and brain of zebrafish (Danio rerio) exposed to low concentrations of waterborne uranium. Lerebours A, et al. Aquat Toxicol, 2010 Oct 1. PMID 20701985
    2. At environmental doses, dietary methylmercury inhibits mitochondrial energy metabolism in skeletal muscles of the zebra fish (Danio rerio). Cambier S, et al. Int J Biochem Cell Biol, 2009 Apr. PMID 18765295
    3. Trapping cardiac recessive mutants via expression-based insertional mutagenesis screening. Ding Y, et al. Circ Res, 2013 Feb 15. PMID 23283723, Free PMC Article
    4. Hypoxia-induced changes in the zebrafish (Danio rerio) skeletal muscle proteome. Chen K, et al. J Proteomics, 2013 Jan 14. PMID 23117182
    5. Comparative analysis of gene expression in brain, liver, skeletal muscles, and gills of zebrafish (Danio rerio) exposed to environmentally relevant waterborne uranium concentrations. Lerebours A, et al. Environ Toxicol Chem, 2009 Jun. PMID 19146232

    See all (16) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables proton transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    contributes_to proton-transporting ATP synthase activity, rotational mechanism IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within monoatomic ion transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in proton motive force-driven ATP synthesis IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within proton motive force-driven ATP synthesis IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within proton transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in mitochondrial inner membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of proton-transporting ATP synthase complex, coupling factor F(o) IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    ATP synthase F(0) complex subunit B1, mitochondrial
    Names
    ATP synthase, H+ transporting, mitochondrial F0 complex, subunit b
    ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001005960.1 → NP_001005960.1  ATP synthase F(0) complex subunit B1, mitochondrial

      See identical proteins and their annotated locations for NP_001005960.1

      Status: PROVISIONAL

      Source sequence(s)
      BC083308
      UniProtKB/TrEMBL
      Q5XJJ3
      Related
      ENSDARP00000002747.4, ENSDART00000009682.7
      Conserved Domains (1) summary
      pfam05405
      Location:85 → 240
      Mt_ATP-synt_B; Mitochondrial ATP synthase B chain precursor (ATP-synt_B)

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007119.7 Reference GRCz11 Primary Assembly

      Range
      25330403..25336180 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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