U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    zgc:113423 zgc:113423 [ Danio rerio (zebrafish) ]

    Gene ID: 569178, updated on 9-Dec-2024

    Summary

    Official Symbol
    zgc:113423provided by ZNC
    Official Full Name
    zgc:113423provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-050913-14
    See related
    Ensembl:ENSDARG00000058978 AllianceGenome:ZFIN:ZDB-GENE-050913-14
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to enable DNA binding activity. Orthologous to human BEND2 (BEN domain containing 2). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See zgc:113423 in Genome Data Viewer
    Location:
    chromosome: 23
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 23 NC_007134.7 (1042635..1056734, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 23 NC_007134.6 (1033504..1047614, complement)

    Chromosome 23 - NC_007134.7Genomic Context describing neighboring genes Neighboring gene cadherin 26, tandem duplicate 2 Neighboring gene cadherin 26, tandem duplicate 1 Neighboring gene si:zfos-905g2.1 Neighboring gene protein FAM13A-like Neighboring gene solute carrier family 34 member 2b Neighboring gene uncharacterized LOC137489066

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Markers

    Clone Names

    • MGC113423

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables molecular_function ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    uncharacterized protein LOC569178

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001030233.1NP_001025404.1  uncharacterized protein LOC569178

      See identical proteins and their annotated locations for NP_001025404.1

      Status: PREDICTED

      Source sequence(s)
      BC096931
      UniProtKB/TrEMBL
      Q4V9E7
      Related
      ENSDARP00000076399.5, ENSDART00000081961.7
      Conserved Domains (1) summary
      smart01025
      Location:435513
      BEN; The BEN domain is found in diverse animal proteins

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007134.7 Reference GRCz11 Primary Assembly

      Range
      1042635..1056734 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)