U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    si:dkey-82f1.1 si:dkey-82f1.1 [ Danio rerio (zebrafish) ]

    Gene ID: 563917, updated on 12-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    si:dkey-82f1.1provided by ZNC
    Official Full Name
    si:dkey-82f1.1provided by ZNC
    Primary source
    ZFIN:ZDB-LINCRNAG-030131-2982
    See related
    Ensembl:ENSDARG00000096850 AllianceGenome:ZFIN:ZDB-LINCRNAG-030131-2982
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Orthologs
    all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See si:dkey-82f1.1 in Genome Data Viewer
    Location:
    chromosome: 25
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 25 NC_007136.7 (2545740..2638748, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 25 NC_007136.6 (2392886..2485407, complement)

    Chromosome 25 - NC_007136.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101886390 Neighboring gene transcriptional enhancer factor TEF-3 Neighboring gene uncharacterized LOC101887189 Neighboring gene uncharacterized LOC137489311 Neighboring gene aarF domain containing kinase 2 Neighboring gene Bardet-Biedl syndrome 4

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    General protein information

    Go to the top of the page Help
    Preferred Names
    DENN domain-containing protein 2A

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007136.7 Reference GRCz11 Primary Assembly

      Range
      2545740..2638748 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021470581.2 → XP_021326256.1  DENN domain-containing protein 2A

      UniProtKB/TrEMBL
      A0A8M9PV68
      Related
      ENSDART00000188890.1
      Conserved Domains (3) summary
      smart00801
      Location:890 → 968
      dDENN; Domain always found downstream of DENN domain, found in a variety of signalling proteins
      smart00800
      Location:561 → 653
      uDENN; Domain always found upstream of DENN domain, found in a variety of signalling proteins
      pfam02141
      Location:660 → 841
      DENN; DENN (AEX-3) domain
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials