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    pvalb5 parvalbumin 5 [ Danio rerio (zebrafish) ]

    Gene ID: 335623, updated on 9-Dec-2024

    Summary

    Official Symbol
    pvalb5provided by ZNC
    Official Full Name
    parvalbumin 5provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-050417-336
    See related
    Ensembl:ENSDARG00000032836 AllianceGenome:ZFIN:ZDB-GENE-050417-336
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fj09c11; wu:fj09c11; wu:fj30d06; zgc:109703
    Summary
    Predicted to enable calcium ion binding activity. Predicted to be active in cytoplasm. Is expressed in hypothalamus; olfactory pit; olfactory placode; peripheral olfactory organ; and telencephalon. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
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    Genomic context

    See pvalb5 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (61209213..61218286, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (60976625..60985698, complement)

    Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene parvalbumin 4 Neighboring gene parvalbumin 1 Neighboring gene lemur tyrosine kinase 2 Neighboring gene tectonin beta-propeller repeat containing 1b

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Clone Names

    • MGC109703

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables calcium ion binding  
    enables calcium ion binding  
    enables metal ion binding  
    Component Evidence Code Pubs
    is_active_in cytoplasm  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_207167.1 → NP_997050.1  parvalbumin 5

      See identical proteins and their annotated locations for NP_997050.1

      Status: PROVISIONAL

      Source sequence(s)
      AF467915
      UniProtKB/TrEMBL
      A0A2R8QAD1, F6P9P9, Q804V9
      Related
      ENSDARP00000055067.3, ENSDART00000055068.5
      Conserved Domains (2) summary
      cd00051
      Location:45 → 108
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
      pfam13499
      Location:45 → 107
      EF-hand_7; EF-hand domain pair

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007114.7 Reference GRCz11 Primary Assembly

      Range
      61209213..61218286 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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