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    si:dkeyp-68b7.7 si:dkeyp-68b7.7 [ Danio rerio (zebrafish) ]

    Gene ID: 566190, updated on 9-Dec-2024

    Summary

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    Official Symbol
    si:dkeyp-68b7.7provided by ZNC
    Official Full Name
    si:dkeyp-68b7.7provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-070912-672
    See related
    AllianceGenome:ZFIN:ZDB-GENE-070912-672
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    wu:fj66h03
    Summary
    Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of hemopoiesis and regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in telencephalon. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See si:dkeyp-68b7.7 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 2 NC_007113.7 (57892666..57918299, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 2 NC_007113.6 (57777903..57803553, complement)

    Chromosome 2 - NC_007113.7Genomic Context describing neighboring genes Neighboring gene pleckstrin homology domain containing, family J member 1 Neighboring gene tubulin polyglutamylase complex subunit 1 Neighboring gene ankyrin repeat domain-containing protein 34B Neighboring gene si:dkeyp-68b7.5 Neighboring gene uncharacterized LOC108180186

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Comprehensive expression map of transcription regulators in the adult zebrafish telencephalon reveals distinct neurogenic niches. Diotel N, et al. J Comp Neurol, 2015 Jun 1. PMID 25556858, Free PMC Article
    2. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein si:dkeyp-68b7.7

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007113.7 Reference GRCz11 Primary Assembly

      Range
      57892666..57918299 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005171474.3 → XP_005171531.2  uncharacterized protein si:dkeyp-68b7.7

      UniProtKB/TrEMBL
      A0A8M2BIW5
      Conserved Domains (4) summary
      COG5048
      Location:431 → 661
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:613 → 633
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:611 → 633
      zf-C2H2; Zinc finger, C2H2 type
      pfam16744
      Location:632 → 671
      Zf_RING; KIAA1045 RING finger
    Nucleotide Protein Strain
    Heading Accession and Version

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    Research Materials