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    fbxo44.9 F-box protein 44, tandem duplicate 9 [ Danio rerio (zebrafish) ]

    Gene ID: 553461, updated on 9-Dec-2024

    Summary

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    Official Symbol
    fbxo44.9provided by ZNC
    Official Full Name
    F-box protein 44, tandem duplicate 9provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-061009-29
    See related
    Ensembl:ENSDARG00000071029 AllianceGenome:ZFIN:ZDB-GENE-061009-29
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    si:dkey-147f3.4
    Summary
    Predicted to contribute to ubiquitin protein ligase activity. Predicted to be involved in ERAD pathway; SCF-dependent proteasomal ubiquitin-dependent protein catabolic process; and glycoprotein catabolic process. Predicted to be part of SCF ubiquitin ligase complex. Predicted to be active in cytoplasm. Orthologous to human FBXO44 (F-box protein 44). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See fbxo44.9 in Genome Data Viewer
    Location:
    chromosome: 23
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 23 NC_007134.7 (16928393..16953500)
    105 previous assembly GRCz10 (GCF_000002035.5) 23 NC_007134.6 (16962659..17026812)

    Chromosome 23 - NC_007134.7Genomic Context describing neighboring genes Neighboring gene F-box protein 44, tandem duplicate 7 Neighboring gene F-box protein 44, tandem duplicate 8 Neighboring gene cell division cycle 42 like 2 Neighboring gene DNA (cytosine-5-)-methyltransferase beta, duplicate b.3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Contrasted innate responses to two viruses in zebrafish: insights into the ancestral repertoire of vertebrate IFN-stimulated genes. Briolat V, et al. J Immunol, 2014 May 1. PMID 24683187
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    involved_in anatomical structure morphogenesis IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC553461

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001159639.1 → NP_001153111.1  uncharacterized protein LOC553461

      Status: PREDICTED

      Source sequence(s)
      CR356239
      UniProtKB/TrEMBL
      A0A8M1NSR5, F1RDW8
      Related
      ENSDARP00000075071.5, ENSDART00000080625.6
      Conserved Domains (2) summary
      pfam00646
      Location:49 → 94
      F-box; F-box domain
      pfam04300
      Location:114 → 287
      FBA; F-box associated region

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007134.7 Reference GRCz11 Primary Assembly

      Range
      16928393..16953500
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017353561.3 → XP_017209050.1  uncharacterized protein LOC553461 isoform X1

      UniProtKB/TrEMBL
      A0A8M6YV88

    2. XM_017353562.3 → XP_017209051.1  uncharacterized protein LOC553461 isoform X2

      UniProtKB/TrEMBL
      A0A8M6Z3R2

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018395140.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      33384..42322
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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