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    mfsd1l major facilitator superfamily domain containing 1-like [ Danio rerio (zebrafish) ]

    Gene ID: 100003326, updated on 9-Dec-2024

    Summary

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    Official Symbol
    mfsd1lprovided by ZNC
    Official Full Name
    major facilitator superfamily domain containing 1-likeprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-080917-43
    See related
    AllianceGenome:ZFIN:ZDB-GENE-080917-43
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    im:7160594; wu:fj59d03
    Summary
    Is expressed in yolk syncytial layer. [provided by Alliance of Genome Resources, Dec 2024]
    Annotation information
    Annotation category: partial on reference assembly
    Orthologs
    all
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    Genomic context

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    See mfsd1l in Genome Data Viewer
    Location:
    chromosome: 24
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 24 NC_007135.7 (39211264..39226058)
    105 previous assembly GRCz10 (GCF_000002035.5) 24 NC_007135.6 (39306443..39313732, complement)

    Chromosome 24 - NC_007135.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110438367 Neighboring gene si:ch73-103b11.2 Neighboring gene essential meiotic structure-specific endonuclease subunit 2 Neighboring gene potassium inwardly rectifying channel subfamily J member 12a

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Characteristics of 29 novel atypical solute carriers of major facilitator superfamily type: evolutionary conservation, predicted structure and neuronal co-expression. Perland E, et al. Open Biol, 2017 Sep. PMID 28878041, Free PMC Article
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    lysosomal dipeptide transporter MFSD1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007135.7 Reference GRCz11 Primary Assembly

      Range
      39211264..39226058
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002666748.7 → XP_002666794.5  lysosomal dipeptide transporter MFSD1

      UniProtKB/TrEMBL
      A0A8M1RMT4
      Conserved Domains (1) summary
      pfam07690
      Location:63 → 391
      MFS_1; Major Facilitator Superfamily
    Nucleotide Protein Strain
    Heading Accession and Version

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