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    tubb4b tubulin, beta 4B class IVb [ Danio rerio (zebrafish) ]

    Gene ID: 336681, updated on 9-Dec-2024

    Summary

    Official Symbol
    tubb4bprovided by ZNC
    Official Full Name
    tubulin, beta 4B class IVbprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-8625
    See related
    Ensembl:ENSDARG00000002344 AllianceGenome:ZFIN:ZDB-GENE-030131-8625
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    tubb2; tubb2c; fa91f09; fb16e09; wu:fa91f09; wu:fa92d05; wu:fb16e09; wu:fb97a11
    Summary
    Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Acts upstream of or within cilium assembly. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm and microtubule. Is expressed in brain. Human ortholog(s) of this gene implicated in Leber congenital amaurosis with early-onset deafness. Orthologous to human TUBB4B (tubulin beta 4B class IVb). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
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    Genomic context

    See tubb4b in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 14 NC_007125.7 (5861457..5865146)
    105 previous assembly GRCz10 (GCF_000002035.5) 14 NC_007125.6 (5554623..5558312)

    Chromosome 14 - NC_007125.7Genomic Context describing neighboring genes Neighboring gene Kazal-type serine peptidase inhibitor domain 2 Neighboring gene AUP1 lipid droplet regulating VLDL assembly factor Neighboring gene lysyl oxidase-like 3a Neighboring gene uncharacterized LOC103912062

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Pathways from PubChem

    General gene information

    Markers

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables GTP binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables structural constituent of cytoskeleton IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables structural constituent of cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    acts_upstream_of_or_within cilium assembly IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in microtubule cytoskeleton organization IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    acts_upstream_of_or_within microtubule-based process IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in mitotic cell cycle IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in microtubule IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in microtubule IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    tubulin beta-4b chain
    Names
    tubulin, beta 2c
    tubulin, beta, 2

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_198809.2NP_942104.2  tubulin beta-4b chain

      See identical proteins and their annotated locations for NP_942104.2

      Status: VALIDATED

      Source sequence(s)
      BC062827, FP085432
      UniProtKB/TrEMBL
      Q6P5M9, Q6PHJ1
      Related
      ENSDARP00000041278.4, ENSDART00000041279.6
      Conserved Domains (1) summary
      PLN00220
      Location:1430
      PLN00220; tubulin beta chain; Provisional

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007125.7 Reference GRCz11 Primary Assembly

      Range
      5861457..5865146
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)