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    ankrd27 ankyrin repeat domain 27 (VPS9 domain) [ Danio rerio (zebrafish) ]

    Gene ID: 386887, updated on 9-Dec-2024

    Summary

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    Official Symbol
    ankrd27provided by ZNC
    Official Full Name
    ankyrin repeat domain 27 (VPS9 domain)provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-121105-1
    See related
    Ensembl:ENSDARG00000089207 AllianceGenome:ZFIN:ZDB-GENE-121105-1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fc41e04; wu:fc41e04; si:ch211-113a14.30
    Summary
    Predicted to enable SNARE binding activity and guanyl-nucleotide exchange factor activity. Predicted to be involved in early endosome to late endosome transport and neuron projection morphogenesis. Predicted to be active in cytoplasmic vesicle; neuron projection; and plasma membrane. Human ortholog(s) of this gene implicated in eosinophilic esophagitis. Orthologous to human ANKRD27 (ankyrin repeat domain 27). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See ankrd27 in Genome Data Viewer
    Location:
    chromosome: 25
    Exon count:
    29
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 25 NC_007136.7 (36405028..36438703)
    105 previous assembly GRCz10 (GCF_000002035.5) 25 NC_007136.6 (35854389..35878884)

    Chromosome 25 - NC_007136.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137489387 Neighboring gene si:ch211-113a14.28 Neighboring gene uncharacterized LOC103909891 Neighboring gene uncharacterized LOC110438397 Neighboring gene iroquois homeobox 3b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    ankyrin repeat domain-containing protein 27

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007136.7 Reference GRCz11 Primary Assembly

      Range
      36405028..36438703
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021470747.2 → XP_021326422.2  ankyrin repeat domain-containing protein 27

      UniProtKB/TrEMBL
      A0A8M9PHH9
      Related
      ENSDARP00000110301.3, ENSDART00000124347.3
    Nucleotide Protein Strain
    Heading Accession and Version

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