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    plxdc2a plexin domain containing 2a [ Danio rerio (zebrafish) ]

    Gene ID: 559852, updated on 9-Dec-2024

    Summary

    Official Symbol
    plxdc2aprovided by ZNC
    Official Full Name
    plexin domain containing 2aprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-070705-16
    See related
    Ensembl:ENSDARG00000077219 AllianceGenome:ZFIN:ZDB-GENE-070705-16
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fb39a09; wu:fb39a09; si:ch211-106h4.6
    Summary
    Predicted to be located in membrane. Orthologous to human PLXDC2 (plexin domain containing 2). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
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    Genomic context

    See plxdc2a in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 2 NC_007113.7 (31614554..31625726)
    105 previous assembly GRCz10 (GCF_000002035.5) 2 NC_007113.6 (31631139..31641974)

    Chromosome 2 - NC_007113.7Genomic Context describing neighboring genes Neighboring gene si:ch211-106h4.4 Neighboring gene uncharacterized LOC110438058 Neighboring gene si:ch211-106h4.5 Neighboring gene myosin VIIA and Rab interacting protein a Neighboring gene si:ch211-106h4.12

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General protein information

    Preferred Names
    plexin domain containing 2a; plexin domain-containing protein 2
    Names
    plexin domain-containing protein 2-like

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007113.7 Reference GRCz11 Primary Assembly

      Range
      31614554..31625726
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_683240.8XP_688332.3  plexin domain-containing protein 2

      UniProtKB/TrEMBL
      A0A8N7T5Q5, F1R5J7
      Related
      ENSDARP00000104146.3, ENSDART00000111038.4
      Conserved Domains (2) summary
      smart00423
      Location:322365
      PSI; domain found in Plexins, Semaphorins and Integrins
      cl02648
      Location:218257
      NIDO; Nidogen-like