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    snupn snurportin 1 [ Danio rerio (zebrafish) ]

    Gene ID: 324743, updated on 9-Dec-2024

    Summary

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    Official Symbol
    snupnprovided by ZNC
    Official Full Name
    snurportin 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-3464
    See related
    Ensembl:ENSDARG00000008395 AllianceGenome:ZFIN:ZDB-GENE-030131-3464
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    rnut1; zgc:77819; wu:fc41a03
    Summary
    Predicted to enable RNA binding activity and nuclear import signal receptor activity. Predicted to be involved in protein import into nucleus and snRNA import into nucleus. Predicted to be located in cytoplasm and nucleus. Orthologous to human SNUPN (snurportin 1). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See snupn in Genome Data Viewer
    Location:
    chromosome: 25
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 25 NC_007136.7 (6435699..6447829, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 25 NC_007136.6 (6308297..6320391, complement)

    Chromosome 25 - NC_007136.7Genomic Context describing neighboring genes Neighboring gene SIN3 transcription regulator family member Aa Neighboring gene protein tyrosine phosphatase non-receptor type 9a Neighboring gene sorting nexin 33 Neighboring gene uncharacterized LOC137489324

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. The zebrafish gene map defines ancestral vertebrate chromosomes. Woods IG, et al. Genome Res, 2005 Sep. PMID 16109975, Free PMC Article
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nuclear import signal receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within protein import into nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in protein import into nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within snRNA import into nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in snRNA import into nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    snurportin-1
    Names
    RNA, U transporter 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_199694.1 → NP_955988.1  snurportin-1

      See identical proteins and their annotated locations for NP_955988.1

      Status: PROVISIONAL

      Source sequence(s)
      BC062858
      UniProtKB/TrEMBL
      A0A8M1PED2, Q6P5J9
      Related
      ENSDARP00000016305.7, ENSDART00000012820.8
      Conserved Domains (2) summary
      cd09232
      Location:108 → 292
      Snurportin-1_C; C-terminal m3G cap-binding domain of nuclear import adaptor snurportin-1
      pfam11538
      Location:25 → 64
      Snurportin1; Snurportin1

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007136.7 Reference GRCz11 Primary Assembly

      Range
      6435699..6447829 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021470452.2 → XP_021326127.1  snurportin-1 isoform X1

      UniProtKB/TrEMBL
      A0A8M9P6D1
      Conserved Domains (2) summary
      cd09232
      Location:108 → 283
      Snurportin-1_C; C-terminal m3G cap-binding domain of nuclear import adaptor snurportin-1
      pfam11538
      Location:25 → 64
      Snurportin1
    Nucleotide Protein Strain
    Heading Accession and Version

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