pspc1 paraspeckle component 1 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: pspc1provided by ZNC
Official Full Name: paraspeckle component 1provided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-9530
See related: Ensembl:ENSDARG00000006621 AllianceGenome:ZFIN:ZDB-GENE-030131-9530
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fj85a06; wu:fj85a06; zgc:136470
Summary: Predicted to enable RNA binding activity. Predicted to be involved in regulation of DNA-templated transcription and regulation of circadian rhythm. Predicted to be located in nuclear speck. Predicted to be active in nucleus. Orthologous to human PSPC1 (paraspeckle component 1). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 1

Exon count:: 9

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	1	NC_007112.7 (27808916..27861148)
105	previous assembly	GRCz10 (GCF_000002035.5)	1	NC_007112.6 (27115202..27167434)

Chromosome 1 - NC_007112.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables RNA binding	IBA Inferred from Biological aspect of Ancestor more info
enables RNA binding	IEA Inferred from Electronic Annotation more info
enables nucleic acid binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in regulation of DNA-templated transcription	IBA Inferred from Biological aspect of Ancestor more info
involved_in regulation of circadian rhythm	ISS Inferred from Sequence or Structural Similarity more info

Component	Evidence Code	Pubs
located_in nuclear speck	IEA Inferred from Electronic Annotation more info
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: paraspeckle component 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001045258.1 → NP_001038723.1 paraspeckle component 1

See identical proteins and their annotated locations for NP_001038723.1

Status: PROVISIONAL

Source sequence(s)

BC116549

UniProtKB/Swiss-Prot

Q1JPY8

Related

ENSDARP00000093111.3, ENSDART00000102335.5

Conserved Domains (3) summary

cd12949
Location:221 → 314

NOPS_PSPC1; NOPS domain, including C-terminal coiled-coil region, in paraspeckle protein component 1 (PSPC1) and similar proteins

cd12586
Location:75 → 145

RRM1_PSP1; RNA recognition motif 1 in vertebrate paraspeckle protein 1 (PSP1)

cd12589
Location:151 → 230

RRM2_PSP1; RNA recognition motif 2 in vertebrate paraspeckle protein 1 (PSP1 or PSPC1)