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    si:ch73-70k4.1 si:ch73-70k4.1 [ Danio rerio (zebrafish) ]

    Gene ID: 555663, updated on 9-Dec-2024

    Summary

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    Official Symbol
    si:ch73-70k4.1provided by ZNC
    Official Full Name
    si:ch73-70k4.1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-3788
    See related
    AllianceGenome:ZFIN:ZDB-GENE-030131-3788
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fc54b08; wu:fc54b08
    Summary
    Predicted to enable ubiquitin binding activity. Predicted to be part of Fanconi anaemia nuclear complex. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See si:ch73-70k4.1 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 8 NC_007119.7 (17529120..17548226)
    105 previous assembly GRCz10 (GCF_000002035.5) 8 NC_007119.6 (17492768..17511481)

    Chromosome 8 - NC_007119.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137496333 Neighboring gene uncharacterized LOC137496334 Neighboring gene v-ski avian sarcoma viral oncogene homolog a Neighboring gene protein kinase C, zeta Neighboring gene uncharacterized LOC137496335 Neighboring gene uncharacterized LOC137496336

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables ubiquitin binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein si:ch73-70k4.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007119.7 Reference GRCz11 Primary Assembly

      Range
      17529120..17548226
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021478395.2 → XP_021334070.1  uncharacterized protein si:ch73-70k4.1 isoform X1

      UniProtKB/TrEMBL
      A0A8M9QIV5
      Conserved Domains (3) summary
      pfam07174
      Location:52 → 161
      FAP; Fibronectin-attachment protein (FAP)
      pfam15750
      Location:539 → 571
      UBZ_FAAP20; Ubiquitin-binding zinc-finger
      cl25397
      Location:269 → 521
      AidA; Type V secretory pathway, adhesin AidA [Cell wall/membrane/envelope biogenesis, Intracellular trafficking, secretion, and vesicular transport]

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394717.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      62859..87499
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021472032.2 → XP_021327707.1  uncharacterized protein si:ch73-70k4.1 isoform X2

      UniProtKB/TrEMBL
      A0A8M9P9T0
      Conserved Domains (2) summary
      pfam15750
      Location:525 → 557
      UBZ_FAAP20; Ubiquitin-binding zinc-finger
      cl25397
      Location:270 → 507
      AidA; Type V secretory pathway, adhesin AidA [Cell wall/membrane/envelope biogenesis, Intracellular trafficking, secretion, and vesicular transport]

    2. XM_678237.8 → XP_683329.5  uncharacterized protein si:ch73-70k4.1 isoform X1

      UniProtKB/TrEMBL
      A0A8N7UUX0
      Conserved Domains (2) summary
      pfam15750
      Location:524 → 556
      UBZ_FAAP20; Ubiquitin-binding zinc-finger
      cl25397
      Location:251 → 506
      AidA; Type V secretory pathway, adhesin AidA [Cell wall/membrane/envelope biogenesis, Intracellular trafficking, secretion, and vesicular transport]
    Nucleotide Protein
    Heading Accession and Version

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