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    rai14 retinoic acid induced 14 [ Danio rerio (zebrafish) ]

    Gene ID: 794796, updated on 9-Dec-2024

    Summary

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    Official Symbol
    rai14provided by ZNC
    Official Full Name
    retinoic acid induced 14provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040718-235
    See related
    Ensembl:ENSDARG00000039974 AllianceGenome:ZFIN:ZDB-GENE-040718-235
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    im:7136186; im:7148445; zgc:101072
    Summary
    Orthologous to human RAI14 (retinoic acid induced 14). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See rai14 in Genome Data Viewer
    Location:
    chromosome: 21
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 21 NC_007132.7 (19547882..19608511)
    105 previous assembly GRCz10 (GCF_000002035.5) 21 NC_007132.6 (19511246..19571873)

    Chromosome 21 - NC_007132.7Genomic Context describing neighboring genes Neighboring gene granzyme K Neighboring gene granzyme A Neighboring gene si:ch211-262i10.2 Neighboring gene fibroblast growth factor 10a Neighboring gene nicotinamide nucleotide transhydrogenase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Sperm, but not oocyte, DNA methylome is inherited by zebrafish early embryos. Jiang L, et al. Cell, 2013 May 9. PMID 23663777, Free PMC Article
    2. Genomic and physiological analyses of the zebrafish atrioventricular canal reveal molecular building blocks of the secondary pacemaker region. Abu Nahia K, et al. Cell Mol Life Sci, 2021 Oct. PMID 34557935, Free PMC Article
    3. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC101072

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    ankycorbin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001111217.2 → NP_001104687.2  ankycorbin

      Status: VALIDATED

      Source sequence(s)
      BX927394, CR749169, CR936438
      UniProtKB/TrEMBL
      A0A8M1NGV4, F1R8J7
      Related
      ENSDARP00000058484.3, ENSDART00000058485.5
      Conserved Domains (4) summary
      cd00204
      Location:82 → 205
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam11570
      Location:620 → 725
      E2R135; Coiled-coil receptor-binding R-domain of colicin E2
      pfam12796
      Location:90 → 182
      Ank_2; Ankyrin repeats (3 copies)
      sd00045
      Location:85 → 116
      ANK; ANK repeat [structural motif]

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007132.7 Reference GRCz11 Primary Assembly

      Range
      19547882..19608511
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021468924.2 → XP_021324599.1  ankycorbin isoform X1

      UniProtKB/TrEMBL
      A0A2R8QEG6, A0A8M9PIH2
      Related
      ENSDARP00000152138.1, ENSDART00000181321.1
      Conserved Domains (4) summary
      cd00204
      Location:82 → 205
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      sd00045
      Location:85 → 116
      ANK; ANK repeat [structural motif]
      cl25732
      Location:477 → 893
      SMC_N; RecF/RecN/SMC N terminal domain
      cl26072
      Location:171 → 276
      Ank_5; Ankyrin repeats (many copies)

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018395087.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      332299..391299
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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