ints6l integrator complex subunit 6 like [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: ints6lprovided by ZNC
Official Full Name: integrator complex subunit 6 likeprovided by ZNC
Primary source: ZFIN:ZDB-GENE-040426-1150
See related: Ensembl:ENSDARG00000017931 AllianceGenome:ZFIN:ZDB-GENE-040426-1150
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: ints6; ddx26b; zgc:63527
Summary: Predicted to be involved in snRNA 3'-end processing. Predicted to be located in nucleus. Predicted to be part of integrator complex. Orthologous to human INTS6L (integrator complex subunit 6 like). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 14

Exon count:: 19

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	14	NC_007125.7 (31566489..31611068)
105	previous assembly	GRCz10 (GCF_000002035.5)	14	NC_007125.6 (31226165..31268410)

Chromosome 14 - NC_007125.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Process	Evidence Code	Pubs
involved_in snRNA 3'-end processing	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
part_of integrator complex	IBA Inferred from Biological aspect of Ancestor more info
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: integrator complex subunit 6

Names: DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B; int6

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_200434.2 → NP_956728.1 integrator complex subunit 6

See identical proteins and their annotated locations for NP_956728.1

Status: PROVISIONAL

Source sequence(s)

BC054905

UniProtKB/Swiss-Prot

Q7SYD9

Related

ENSDARP00000026435.5, ENSDART00000002684.8

Conserved Domains (2) summary

cd00198
Location:4 → 131

vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

pfam15300
Location:810 → 870

INT_SG_DDX_CT_C; INTS6/SAGE1/DDX26B/CT45 C-terminus