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    ankmy1 ankyrin repeat and MYND domain containing 1 [ Danio rerio (zebrafish) ]

    Gene ID: 568987, updated on 9-Dec-2024

    Summary

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    Official Symbol
    ankmy1provided by ZNC
    Official Full Name
    ankyrin repeat and MYND domain containing 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-050208-740
    See related
    AllianceGenome:ZFIN:ZDB-GENE-050208-740
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    ANKMY; wu:fj17c07; si:rp71-69p9.2
    Summary
    Predicted to enable metal ion binding activity. Orthologous to human ANKMY1 (ankyrin repeat and MYND domain containing 1). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See ankmy1 in Genome Data Viewer
    Location:
    chromosome: 22
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 22 NC_007133.7 (15550024..15569748, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 22 NC_007133.6 (15525637..15543620, complement)

    Chromosome 22 - NC_007133.7Genomic Context describing neighboring genes Neighboring gene glypican 5b Neighboring gene glypican 1a Neighboring gene hematopoietic SH2 domain containing Neighboring gene tropomyosin 4a

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    ankyrin repeat and MYND domain-containing protein 1
    Names
    ankyrin repeat and MYND domain protein 1
    testis specific ankyrin-like protein 1
    zinc-finger MYND domain protein 13

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007133.7 Reference GRCz11 Primary Assembly

      Range
      15550024..15569748 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_692348.9 → XP_697440.1  ankyrin repeat and MYND domain-containing protein 1

      UniProtKB/TrEMBL
      A0A8M9PQ11
      Conserved Domains (4) summary
      cd00204
      Location:576 → 731
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      sd00045
      Location:608 → 641
      ANK; ANK repeat [structural motif]
      pfam01753
      Location:900 → 940
      zf-MYND; MYND finger
      cl27415
      Location:10 → 118
      COG4642; Uncharacterized conserved protein [Function unknown]

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018395098.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      231970..251249 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021473443.2 → XP_021329118.1  ankyrin repeat and MYND domain-containing protein 1

      UniProtKB/TrEMBL
      A0A8M9PQ11
      Conserved Domains (4) summary
      cd00204
      Location:576 → 731
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      sd00045
      Location:608 → 641
      ANK; ANK repeat [structural motif]
      pfam01753
      Location:900 → 940
      zf-MYND; MYND finger
      cl27415
      Location:10 → 118
      COG4642; Uncharacterized conserved protein [Function unknown]
    Nucleotide Protein
    Heading Accession and Version

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