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    lsm14aa LSM14A mRNA processing body assembly factor a [ Danio rerio (zebrafish) ]

    Gene ID: 393397, updated on 9-Dec-2024

    Summary

    Official Symbol
    lsm14aaprovided by ZNC
    Official Full Name
    LSM14A mRNA processing body assembly factor aprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040426-1567
    See related
    Ensembl:ENSDARG00000006600 AllianceGenome:ZFIN:ZDB-GENE-040426-1567
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fam61a; lsm14a; zgc:63681; zgc:66203; zgc:77302; wu:fj52e11
    Summary
    Predicted to enable mRNA binding activity. Predicted to be involved in P-body assembly and stress granule assembly. Predicted to be located in cytoplasm. Predicted to be active in P-body. Orthologous to human LSM14A (LSM14A mRNA processing body assembly factor). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
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    Genomic context

    See lsm14aa in Genome Data Viewer
    Location:
    chromosome: 25
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 25 NC_007136.7 (35889131..35909635)
    105 previous assembly GRCz10 (GCF_000002035.5) 25 NC_007136.6 (35384151..35406152)

    Chromosome 25 - NC_007136.7Genomic Context describing neighboring genes Neighboring gene kinesin family member 21A Neighboring gene uncharacterized LOC101885762 Neighboring gene copine VIII Neighboring gene glucose-6-phosphate isomerase a Neighboring gene hydroxysteroid (17-beta) dehydrogenase 2 Neighboring gene M-phase phosphoprotein 6

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Markers

    Clone Names

    • MGC66203

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    LSM14A mRNA processing body assembly factor a
    Names
    LSM14 homolog A
    LSM14 homolog Aa
    LSM14A, SCD6 homolog Aa
    alpha synuclein binding protein
    alphaSNBP(B)
    family with sequence similarity 61, member A

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_200425.2NP_956719.2  LSM14A mRNA processing body assembly factor a

      See identical proteins and their annotated locations for NP_956719.2

      Status: PROVISIONAL

      Source sequence(s)
      BC065337
      UniProtKB/TrEMBL
      A0A8M1PH53, Q6P111
      Related
      ENSDARP00000009428.7, ENSDART00000023453.9
      Conserved Domains (2) summary
      cd01736
      Location:477
      LSm14_N; Like-Sm protein 14, N-terminal domain
      pfam09532
      Location:264382
      FDF; FDF domain

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007136.7 Reference GRCz11 Primary Assembly

      Range
      35889131..35909635
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021470461.2XP_021326136.1  LSM14A mRNA processing body assembly factor a isoform X1

      UniProtKB/TrEMBL
      A0A8M9PUV2
      Conserved Domains (2) summary
      cd01736
      Location:477
      LSm14_N; Like-Sm protein 14, N-terminal domain
      pfam09532
      Location:291409
      FDF; FDF domain
    2. XM_021470462.2XP_021326137.1  LSM14A mRNA processing body assembly factor a isoform X2

      UniProtKB/TrEMBL
      A0A8M9P6D7
      Conserved Domains (2) summary
      cd01736
      Location:477
      LSm14_N; Like-Sm protein 14, N-terminal domain
      pfam09532
      Location:261379
      FDF; FDF domain
    3. XM_005163175.3XP_005163232.1  LSM14A mRNA processing body assembly factor a isoform X3

      UniProtKB/TrEMBL
      A0A8M2BAB1
      Conserved Domains (2) summary
      cd01736
      Location:477
      LSm14_N; Like-Sm protein 14, N-terminal domain
      pfam09532
      Location:234352
      FDF; FDF domain