gtf3c2 general transcription factor IIIC, polypeptide 2, beta [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: gtf3c2provided by ZNC
Official Full Name: general transcription factor IIIC, polypeptide 2, betaprovided by ZNC
Primary source: ZFIN:ZDB-GENE-041014-349
See related: Ensembl:ENSDARG00000004574 AllianceGenome:ZFIN:ZDB-GENE-041014-349
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: si:ch211-245h14.3
Summary: Predicted to be involved in transcription by RNA polymerase III. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIIIC complex. Orthologous to human GTF3C2 (general transcription factor IIIC subunit 2). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 20

Exon count:: 19

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	20	NC_007131.7 (38543342..38584772)
105	previous assembly	GRCz10 (GCF_000002035.5)	20	NC_007131.6 (38640440..38682279)

Chromosome 20 - NC_007131.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Process	Evidence Code	Pubs
involved_in transcription by RNA polymerase III	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
located_in nucleus	IEA Inferred from Electronic Annotation more info
part_of transcription factor TFIIIC complex	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: general transcription factor 3C polypeptide 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001045018.2 → NP_001038483.2 general transcription factor 3C polypeptide 2

Status: PROVISIONAL

Source sequence(s)

BX569783

UniProtKB/TrEMBL

A0A8M1N9S7, Q5RHA2

Related

ENSDARP00000092036.5, ENSDART00000101262.6

Conserved Domains (1) summary

cl02567
Location:429 → 561

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007131.7 Reference GRCz11 Primary Assembly

Range

38543342..38584772

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_005160828.5 → XP_005160885.1 general transcription factor 3C polypeptide 2 isoform X1

UniProtKB/TrEMBL

A0A8M2B813, F1R215

Related

ENSDARP00000008672.6, ENSDART00000020969.9

Conserved Domains (3) summary

COG2319
Location:346 → 689

WD40; WD40 repeat [General function prediction only]

sd00039
Location:407 → 465

7WD40; WD40 repeat [structural motif]

cl02567
Location:489 → 584

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...