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    rbm7 RNA binding motif protein 7 [ Danio rerio (zebrafish) ]

    Gene ID: 334784, updated on 9-Dec-2024

    Summary

    Official Symbol
    rbm7provided by ZNC
    Official Full Name
    RNA binding motif protein 7provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-6724
    See related
    Ensembl:ENSDARG00000020841 AllianceGenome:ZFIN:ZDB-GENE-030131-6724
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fa03f03; zgc:56619; zgc:77304; wu:fa03f03; CH73-374A6.3
    Summary
    Predicted to enable single-stranded RNA binding activity. Acts upstream of or within axonogenesis and cerebellar Purkinje cell layer structural organization. Predicted to be located in nucleoplasm. Predicted to be active in nucleus. Orthologous to human RBM7 (RNA binding motif protein 7). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
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    Genomic context

    See rbm7 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 18 NC_007129.7 (47301165..47306847)
    105 previous assembly GRCz10 (GCF_000002035.5) 18 NC_007129.6 (47305773..47311455)

    Chromosome 18 - NC_007129.7Genomic Context describing neighboring genes Neighboring gene CXADR like membrane protein b Neighboring gene uncharacterized LOC137488344 Neighboring gene BARX homeobox 2 Neighboring gene uncharacterized LOC137488231

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Markers

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables RNA binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables single-stranded RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_199925.1NP_956219.1  RNA-binding protein 7

      See identical proteins and their annotated locations for NP_956219.1

      Status: PROVISIONAL

      Source sequence(s)
      BC049507
      UniProtKB/Swiss-Prot
      Q6P0F4
      UniProtKB/TrEMBL
      Q7ZWA5
      Related
      ENSDARP00000007431.7, ENSDART00000009775.8
      Conserved Domains (2) summary
      COG0724
      Location:8150
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cl17169
      Location:882
      RRM_SF; RNA recognition motif (RRM) superfamily

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007129.7 Reference GRCz11 Primary Assembly

      Range
      47301165..47306847
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)