trit1 tRNA isopentenyltransferase 1 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: trit1provided by ZNC
Official Full Name: tRNA isopentenyltransferase 1provided by ZNC
Primary source: ZFIN:ZDB-GENE-060503-297
See related: Ensembl:ENSDARG00000032876 AllianceGenome:ZFIN:ZDB-GENE-060503-297
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: si:ch211-194e15.1
Summary: Predicted to enable tRNA dimethylallyltransferase activity. Predicted to be involved in tRNA modification. Predicted to act upstream of or within tRNA processing. Predicted to be located in cytoplasm. Predicted to be active in mitochondrion. Is expressed in telencephalon. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 35. Orthologous to human TRIT1 (tRNA isopentenyltransferase 1). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 19

Exon count:: 11

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	19	NC_007130.7 (30722767..30800004, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	19	NC_007130.6 (31135454..31212769, complement)

Chromosome 19 - NC_007130.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables ATP binding	IEA Inferred from Electronic Annotation more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info
enables nucleotide binding	IEA Inferred from Electronic Annotation more info
enables tRNA dimethylallyltransferase activity	IBA Inferred from Biological aspect of Ancestor more info
enables tRNA dimethylallyltransferase activity	IEA Inferred from Electronic Annotation more info
enables transferase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in tRNA modification	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within tRNA processing	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
is_active_in mitochondrion	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: tRNA dimethylallyltransferase

NP_001038239.1

EC 2.5.1.75

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001044774.1 → NP_001038239.1 tRNA dimethylallyltransferase

Status: PROVISIONAL

Source sequence(s)

BX547927

UniProtKB/TrEMBL

A0A8M1N9A5, A0A8M9PRJ0, F1Q4Z4, Q1LWL7

Related

ENSDARP00000104694.2, ENSDART00000128560.4

Conserved Domains (2) summary

PLN02748
Location:9 → 424

PLN02748; tRNA dimethylallyltransferase

PRK00091
Location:13 → 327

miaA; tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed