homeza homeobox and leucine zipper encoding a [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: homezaprovided by ZNC
Official Full Name: homeobox and leucine zipper encoding aprovided by ZNC
Primary source: ZFIN:ZDB-GENE-030616-592
See related: Ensembl:ENSDARG00000054304 AllianceGenome:ZFIN:ZDB-GENE-030616-592
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: homez; cb1072; cb1090; wu:fa01h04; wu:fc54c08; si:zc14a17.9
Summary: Predicted to enable DNA binding activity and DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in several structures, including axis; central nervous system; immature eye; mesoderm; and neural plate. Orthologous to human HOMEZ (homeobox and leucine zipper encoding). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: all
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Genomic context

Location:: chromosome: 2

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	2	NC_007113.7 (38271354..38276474)
105	previous assembly	GRCz10 (GCF_000002035.5)	2	NC_007113.6 (38289026..38294146)

Chromosome 2 - NC_007113.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fa01h04.s1 (e-PCR)
- UniSTS:202135

fa01h04.r1 (e-PCR)
- UniSTS:186852

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables DNA binding	IEA Inferred from Electronic Annotation more info
enables DNA binding	ISS Inferred from Sequence or Structural Similarity more info	PubMed
enables DNA-binding transcription factor activity, RNA polymerase II-specific	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in regulation of transcription by RNA polymerase II	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info
located_in nucleus	IEA Inferred from Electronic Annotation more info
located_in nucleus	ISS Inferred from Sequence or Structural Similarity more info	PubMed

General protein information

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Preferred Names: homeobox and leucine zipper encoding a

Names: homeodomain leucine zipper gene a

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001007120.2 → NP_001007121.2 homeobox and leucine zipper encoding a

See identical proteins and their annotated locations for NP_001007121.2

Status: PROVISIONAL

Source sequence(s)

BC117599

UniProtKB/TrEMBL

Q1ED06

Related

ENSDARP00000042099.4, ENSDART00000042100.5

Conserved Domains (3) summary

smart00389
Location:256 → 312

HOX; Homeodomain

cd00086
Location:95 → 144

homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.

pfam11569
Location:589 → 643

Homez; Homeodomain leucine-zipper encoding, Homez