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    serinc4 serine incorporator 4 [ Danio rerio (zebrafish) ]

    Gene ID: 570112, updated on 9-Dec-2024

    Summary

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    Official Symbol
    serinc4provided by ZNC
    Official Full Name
    serine incorporator 4provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-121031-1
    See related
    Ensembl:ENSDARG00000044815 AllianceGenome:ZFIN:ZDB-GENE-121031-1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to be located in membrane. Orthologous to human SERINC4 (serine incorporator 4). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See serinc4 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (50436448..50475459)
    105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (50163703..50203168)

    Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene microfibril associated protein 1 Neighboring gene huntingtin interacting protein K Neighboring gene ADAMTS like 5 Neighboring gene uncharacterized LOC137496214 Neighboring gene CREB regulated transcription coactivator 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    is_active_in membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    serine incorporator 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007118.7 Reference GRCz11 Primary Assembly

      Range
      50436448..50475459
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005166490.4 → XP_005166547.1  serine incorporator 4 isoform X2

      UniProtKB/TrEMBL
      A0A8M2BE25
      Conserved Domains (1) summary
      pfam03348
      Location:15 → 444
      Serinc; Serine incorporator (Serinc)

    2. XM_693550.9 → XP_698642.3  serine incorporator 4 isoform X1

      UniProtKB/TrEMBL
      A0A8N7T8B4, E7F5D2
      Related
      ENSDARP00000089585.3, ENSDART00000098815.6
      Conserved Domains (1) summary
      pfam03348
      Location:27 → 458
      Serinc; Serine incorporator (Serinc)
    Nucleotide Protein Strain
    Heading Accession and Version

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