arl3l1 ADP ribosylation factor like GTPase 3, like 1 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: arl3l1provided by ZNC
Official Full Name: ADP ribosylation factor like GTPase 3, like 1provided by ZNC
Primary source: ZFIN:ZDB-GENE-040426-1649
See related: Ensembl:ENSDARG00000111106 AllianceGenome:ZFIN:ZDB-GENE-040426-1649
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: zgc:73049
Summary: Predicted to enable GTP binding activity. Acts upstream of or within regulation of axon extension involved in axon guidance. Predicted to be located in centrosome. Predicted to be active in cytoplasm and microtubule cytoskeleton. Is expressed in neural plate; optic vesicle; periderm; and visual system. [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: all
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Genomic context

Location:: chromosome: 21

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	21	NC_007132.7 (33172400..33185577)
105	previous assembly	GRCz10 (GCF_000002035.5)	21	NC_007132.6 (33139052..33152410)

Chromosome 21 - NC_007132.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables GTP binding	IBA Inferred from Biological aspect of Ancestor more info
enables GTP binding	IEA Inferred from Electronic Annotation more info
enables GTPase activity	IEA Inferred from Electronic Annotation more info
enables nucleotide binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in cilium assembly	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within regulation of axon extension involved in axon guidance	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
located_in centrosome	IEA Inferred from Electronic Annotation more info
is_active_in cytoplasm	IBA Inferred from Biological aspect of Ancestor more info
is_active_in microtubule cytoskeleton	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: ADP ribosylation factor like GTPase 3, like 1

Names: ADP-ribosylation factor-like 3, like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_200693.1 → NP_956987.1 ADP ribosylation factor like GTPase 3, like 1

See identical proteins and their annotated locations for NP_956987.1

Status: PROVISIONAL

Source sequence(s)

BC059431

UniProtKB/TrEMBL

A0A8M1PBL4, Q6PC92

Related

ENSDARP00000149094.1, ENSDART00000183532.1

Conserved Domains (2) summary

smart00178
Location:17 → 182

SAR; Sar1p-like members of the Ras-family of small GTPases

cd04155
Location:8 → 181

Arl3; Arf-like 3 (Arl3) GTPase