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    • Showing Current items.

    nhr-154 Nuclear hormone receptor family member nhr-154 [ Caenorhabditis elegans ]

    Gene ID: 182565, updated on 9-Dec-2024

    Summary

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    Official Symbol
    nhr-154
    Official Full Name
    Nuclear hormone receptor family member nhr-154
    Primary source
    WormBase:WBGene00007547
    Locus tag
    CELE_C13C4.2
    See related
    AllianceGenome:WB:WBGene00007547
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and nuclear receptor activity. Involved in response to starvation. Predicted to be located in nucleus. Is expressed in alimentary muscle; head neurons; intestine; pharynx; and rectal valve cell. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See nhr-154 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    9
    Sequence:
    Chromosome: V; NC_003283.11 (12101293..12103396)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Nuclear receptor Neighboring gene Nuclear hormone receptor family member nhr-209 Neighboring gene ncRNA Neighboring gene Nuclear hormone receptor family member nhr-153 Neighboring gene Nuclear hormone receptor family member nhr-136;Nuclear receptor domain-containing protein Neighboring gene Phospholysine phosphohistidine inorganic pyrophosphate phosphatase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Diversification of fasting regulated transcription in a cluster of duplicated nuclear hormone receptors in C. elegans. Vohanka J, et al. Gene Expr Patterns, 2010 Sep. PMID 20460175, Free PMC Article
    2. Analysis of Caenorhabditis elegans phosphoproteome reveals the involvement of a molecular chaperone, HSP-90 protein during Salmonella enterica Serovar Typhi infection. Balasubramaniam B, et al. Int J Biol Macromol, 2019 Sep 15. PMID 31252012
    3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nuclear receptor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in cell differentiation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in intracellular receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in response to starvation IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Nuclear hormone receptor family member nhr-154
    NP_506037.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      12101293..12103396
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_073636.5 → NP_506037.2  Nuclear hormone receptor family member nhr-154 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_506037.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O01931, O02284
      Conserved Domains (2) summary
      cd06960
      Location:83 → 160
      NR_DBD_HNF4A; DNA-binding domain of heptocyte nuclear factor 4 (HNF4) is composed of two C4-type zinc fingers
      smart00430
      Location:266 → 429
      HOLI; Ligand binding domain of hormone receptors
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O01931.3

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