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    C49H3.3 UPF0642 protein YBL028C [ Caenorhabditis elegans ]

    Gene ID: 177582, updated on 9-Dec-2024

    Summary

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    Official Symbol
    C49H3.3
    Official Full Name
    UPF0642 protein YBL028C
    Primary source
    WormBase:WBGene00016790
    Locus tag
    CELE_C49H3.3
    See related
    AllianceGenome:WB:WBGene00016790
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable basal RNA polymerase II transcription machinery binding activity. Predicted to be involved in dendrite extension. Predicted to be active in nucleolus. Orthologous to human LLPH (LLP homolog, long-term synaptic facilitation factor). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See C49H3.3 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    4
    Sequence:
    Chromosome: IV; NC_003282.8 (7924350..7924968)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene Exportin-T Neighboring gene BPTI/Kunitz inhibitor domain-containing protein Neighboring gene ncRNA Neighboring gene Small ribosomal subunit protein uS5 Neighboring gene ncRNA Neighboring gene Neuropeptide-Like Protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003282.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables basal RNA polymerase II transcription machinery binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in dendrite extension IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleolus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    UPF0642 protein YBL028C
    NP_501321.1
    • Partially confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      7924350..7924968
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_068920.4 → NP_501321.1  UPF0642 protein YBL028C [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_501321.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9GYQ6
      Conserved Domains (1) summary
      pfam10169
      Location:3 → 86
      Laps; Learning-associated protein
    Nucleotide Protein
    Heading Accession and Version

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