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    F53F4.11 Ribosomal L1 domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 179849, updated on 9-Dec-2024

    Summary

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    Official Symbol
    F53F4.11
    Official Full Name
    Ribosomal L1 domain-containing protein
    Primary source
    WormBase:WBGene00009993
    Locus tag
    CELE_F53F4.11
    See related
    AllianceGenome:WB:WBGene00009993
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Orthologous to human RSL1D1 (ribosomal L1 domain containing 1). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See F53F4.11 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    3
    Sequence:
    Chromosome: V; NC_003283.11 (13622107..13624524, complement)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene G-protein coupled receptors family 1 profile domain-containing protein;Serpentine Receptor, class D (delta) Neighboring gene Neuropeptide-Like Protein Neighboring gene Uncharacterized protein Neighboring gene ncRNA Neighboring gene putative NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial Neighboring gene Thioredoxin domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. FACT Sets a Barrier for Cell Fate Reprogramming in Caenorhabditis elegans and Human Cells. Kolundzic E, et al. Dev Cell, 2018 Sep 10. PMID 30078731, Free PMC Article
    2. SH3 interactome conserves general function over specific form. Xin X, et al. Mol Syst Biol, 2013. PMID 23549480, Free PMC Article
    3. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
    4. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article
    5. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    Ribosomal L1 domain-containing protein
    NP_506375.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      13622107..13624524 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_073974.6 → NP_506375.1  Ribosomal L1 domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_506375.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q20720
      Conserved Domains (2) summary
      pfam00687
      Location:180 → 411
      Ribosomal_L1; Ribosomal protein L1p/L10e family
      pfam11081
      Location:17 → 98
      DUF2890; Protein of unknown function (DUF2890)
    Nucleotide Protein
    Heading Accession and Version

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