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    dpy-6 DumPY: shorter than wild-type [ Caenorhabditis elegans ]

    Gene ID: 181099, updated on 9-Dec-2024

    Summary

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    Official Symbol
    dpy-6
    Official Full Name
    DumPY: shorter than wild-type
    Primary source
    WormBase:WBGene00001068
    Locus tag
    CELE_F16F9.2
    See related
    AllianceGenome:WB:WBGene00001068
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Enables calmodulin binding activity. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See dpy-6 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    8
    Sequence:
    Chromosome: X; NC_003284.9 (8450381..8455640, complement)

    Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene LITAF domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003284.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The oscillating Mucin-type protein DPY-6 has a conserved role in nematode mouth and cuticle formation. Sun S, et al. Genetics, 2022 Mar 3. PMID 35088845, Free PMC Article
    2. Chromosome rearrangements in Caenorhabditis elegans. Herman RK, et al. Genetics, 1976 May. PMID 1269921, Free PMC Article
    3. N-glycans are involved in the response of Caenorhabditis elegans to bacterial pathogens. Shi H, et al. Methods Enzymol, 2006. PMID 17132514
    4. Cuticle surface proteins of wild type and mutant Caenorhabditis elegans. Blaxter ML. J Biol Chem, 1993 Mar 25. PMID 8503957
    5. Oscheius tipulae. Félix MA. WormBook, 2006 Aug 16. PMID 18050438, Free PMC Article

    See all (27) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables calmodulin binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DumPY: shorter than wild-type
    NP_509435.2
    • Product from WormBase gene class dpy;
      Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003284.9 Reference assembly

      Range
      8450381..8455640 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_077034.5 → NP_509435.2  DumPY: shorter than wild-type [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_509435.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q94185
      Conserved Domains (2) summary
      cd16269
      Location:1157 → 1166
      GBP_C; coiled coil [structural motif]
      cl20817
      Location:1089 → 1182
      GBP_C; Guanylate-binding protein, C-terminal domain
    Nucleotide Protein
    Heading Accession and Version

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