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    • Showing Current items.

    F52E1.5 Chondroitin proteoglycan 3 [ Caenorhabditis elegans ]

    Gene ID: 3565082, updated on 9-Dec-2024

    Summary

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    Official Symbol
    F52E1.5
    Official Full Name
    Chondroitin proteoglycan 3
    Primary source
    WormBase:WBGene00018694
    Locus tag
    CELE_F52E1.5
    See related
    AllianceGenome:WB:WBGene00018694
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Involved in innate immune response. Is expressed in XXXL and XXXR. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See F52E1.5 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    3
    Sequence:
    Chromosome: V; NC_003283.11 (8379506..8383668)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Guanine nucleotide-binding protein alpha-2 subunit Neighboring gene DUF3707 domain-containing protein Neighboring gene Protein kinase domain-containing protein Neighboring gene pseudo Neighboring gene ZP domain-containing protein Neighboring gene SHSP domain-containing protein Neighboring gene Guanylate cyclase;Receptor-type guanylate cyclase gcy-7 Neighboring gene Lysosomal acid phosphatase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A conserved role for a GATA transcription factor in regulating epithelial innate immune responses. Shapira M, et al. Proc Natl Acad Sci U S A, 2006 Sep 19. PMID 16968778, Free PMC Article
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in innate immune response HEP PubMed 

    General protein information

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    Preferred Names
    Chondroitin proteoglycan 3
    NP_505164.4
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      8379506..8383668
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_072763.9 → NP_505164.4  Chondroitin proteoglycan 3 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_505164.4

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q2PJ98
    Nucleotide Protein
    Heading Accession and Version

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