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    • Showing Current items.

    Y58A7A.3 IBR domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 178896, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Y58A7A.3
    Official Full Name
    IBR domain-containing protein
    Primary source
    WormBase:WBGene00021977
    Locus tag
    CELE_Y58A7A.3
    See related
    AllianceGenome:WB:WBGene00021977
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable zinc ion binding activity. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See Y58A7A.3 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    6
    Sequence:
    Chromosome: V; NC_003283.11 (5077854..5080903, complement)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Copper transport protein Neighboring gene Venom peptide Neighboring gene IBR domain-containing protein Neighboring gene ncRNA Neighboring gene Uncharacterized protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    IBR domain-containing protein
    NP_504360.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      5077854..5080903 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_071959.9 → NP_504360.1  IBR domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_504360.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q966A6
      Conserved Domains (1) summary
      cl19760
      Location:583 → 651
      IBR; IBR domain, a half RING-finger domain
    Nucleotide Protein
    Heading Accession and Version

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