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    hpo-6 CUB_2 domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 176965, updated on 9-Dec-2024

    Summary

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    Official Symbol
    hpo-6
    Official Full Name
    CUB_2 domain-containing protein
    Primary source
    WormBase:WBGene00021518
    Locus tag
    CELE_Y41D4B.16
    See related
    AllianceGenome:WB:WBGene00021518
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Located in membrane raft. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See hpo-6 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    5
    Sequence:
    Chromosome: IV; NC_003282.8 (1562184..1564076)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene CUB_2 domain-containing protein Neighboring gene CUB_2 domain-containing protein Neighboring gene ncRNA Neighboring gene Nucleoporin Nup133/Nup155-like C-terminal domain-containing protein;Nucleoporin Nup133/Nup155-like N-terminal domain-containing protein;Nucleoporin_N domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003282.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. p38 MAPK regulates expression of immune response genes and contributes to longevity in C. elegans. Troemel ER, et al. PLoS Genet, 2006 Nov 10. PMID 17096597, Free PMC Article
    2. An analysis of the Caenorhabditis elegans lipid raft proteome using geLC-MS/MS. Rao W, et al. J Proteomics, 2011 Feb 1. PMID 21070894
    3. Improved Biocompatibility of Amino-Functionalized Graphene Oxide in Caenorhabditis elegans. Rive C, et al. Small, 2019 Nov. PMID 31576668
    4. Transcriptome analyses describe the consequences of persistent HIF-1 over-activation in Caenorhabditis elegans. Feng D, et al. PLoS One, 2024. PMID 38517909, Free PMC Article
    5. Screening for cold tolerance genes in C. elegans, whose expressions are affected by anticancer drugs camptothecin and leptomycin B. Okahata M, et al. Sci Rep, 2024 Mar 5. PMID 38443452, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    located_in membrane raft HDA PubMed 

    General protein information

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    Preferred Names
    CUB_2 domain-containing protein
    NP_500100.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      1562184..1564076
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_067699.4 → NP_500100.1  CUB_2 domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_500100.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q95Y17
      Conserved Domains (1) summary
      pfam03409
      Location:43 → 433
      Glycoprotein; Transmembrane glycoprotein
    Nucleotide Protein
    Heading Accession and Version

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